 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.14G216500.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
DBB |
| Protein Properties |
Length: 277aa MW: 30556.3 Da PI: 6.7711 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.14G216500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 21.2 | 6.2e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
C+ ++++e++ fC+ ++ lC+ C H+ H+
Glyma.14G216500.1.p 4 QCDVCNKHEASVFCTADEAALCDGCDHRVHHAnklaskHQ 43
7**************************9964446666676 PP
|
| 2 | zf-B_box | 25 | 3.8e-08 | 54 | 93 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
+ + C+ ++e ++ fC++++ lC++C +++H+ Ht+
Glyma.14G216500.1.p 54 QHPLCDICQERRAFTFCQQDRAILCKECDVSIHSAneHTL 93
5689*****************************6688987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009640 | Biological Process | photomorphogenesis |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MKIQCDVCNK HEASVFCTAD EAALCDGCDH RVHHANKLAS KHQRFSLLRP SHKQHPLCDI 60
CQERRAFTFC QQDRAILCKE CDVSIHSANE HTLKHDRFLL TGVKLAASAM LRSSQTTSDS 120
NSTPSLLNVS HQTTPLPSST TTTTTNNNNN KVAVEGTGST SASSISEYLI ETLPGWQVED 180
FLDSYFVPFG FCKNDEVLPR LDADVEGHMG SFSTENMGIW VPQAPPPLVC SSQMDRVIVQ 240
SETNIKGSSI SRLKDDTFTV PQISPPSNSK RARFLW*
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.17860 | 0.0 | cotyledon| epicotyl| hypocotyl| leaf| root| stem| vegetative bud |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
| Publications
? help Back to Top |
- Xu D, et al.
BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
[PMID:27325768] - Xu DB, et al.
The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis.
Mol Plant, 2017. 10(9): p. 1206-1223
[PMID:28827171] - Xu D,Jiang Y,Li J,Holm M,Deng XW
The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
Plant Physiol., 2018. 176(3): p. 2365-2375
[PMID:29259103] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
Plant Physiol., 2018. 176(4): p. 2963-2976
[PMID:29439209] - Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
Plant Physiol., 2018. 177(1): p. 369-380
[PMID:29555784] - Kang X, et al.
HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
Plant Cell Environ., 2018. 41(8): p. 1912-1925
[PMID:29748960]
|
