PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G210000.1.p | ||||||||
Common Name | GLYMA_14G210000, LOC100809019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 645aa MW: 73440.7 Da PI: 4.8435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.2 | 6.3e-57 | 5 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgk Glyma.14G210000.1.p 5 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGK 93 79****************************.99***************6434445667******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s + ++vg+kktLv+y+grap+g++t+Wvmheyrl Glyma.14G210000.1.p 94 DRKVNS-QARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 132 ******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-64 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.709 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-30 | 6 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MAPVLPPGFR FHPTDEELVA YYLKRKINGR KIELEIIPEV DLYKCEPWDL PGKSLLPGKD 60 LEWYFFSPRD RKYPNGSRTN RATKSGYWKA TGKDRKVNSQ ARAVGMKKTL VYYRGRAPHG 120 SRTNWVMHEY RLDERECETN SGLQDAYALC RVVKKTAVIP PKVGGHYVNV PNANKITSDQ 180 SSSIELYSEG RHEDLDSSNY LMSMDICSPC NMGNDQTSLT INSGMTRDLE KWSHFSSQDP 240 LFSLPTSSSF SNFGAIAYPP SKVDIALECA RMQHRFVMPP LEVDDFPQVG VSELKMAQAS 300 GSMQGSCRTE TDILQEILSV AQVSQELINQ SSYSQDWGGN DNYAPREDDF TFMVGTNYNH 360 SNEMSSMRYV DKTWEDAINT RTIEIGDVDE EFKEERMVEN LRWVGMSSED LEKMQEQKIV 420 PIEDISSFQT NREENEVQES EQQNNKEHND TEINDFSLGF INDDDPNKNF IEDGNMDDYS 480 SSPSFEVVEE IKVNHGMLVS TRQVVETFFH QIVPSQTVQV HLINSVMAHN HYVENAEAML 540 MIMENQGSLL RNKVKAYVMG KLIKPSKTIA SAIVFIFAFV LMHCVYLKEE VEIWNESNNE 600 VWFVGVKSHD EKGLSAILKK IGIFLTISLA LCTMWANQNM IVNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-57 | 5 | 157 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G210000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-145 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544352.1 | 0.0 | NAC domain-containing protein 86 | ||||
Refseq | XP_028199803.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A445H8Y1 | 0.0 | A0A445H8Y1_GLYSO; NAC domain-containing protein 86 | ||||
TrEMBL | I1MBR0 | 0.0 | I1MBR0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G39080.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 | Representative plant | OGRP8717 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-158 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G210000.1.p |
Entrez Gene | 100809019 |