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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G205600.1.p | ||||||||
Common Name | GLYMA_14G205600, LOC100800489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 31771.2 Da PI: 7.0107 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 125 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +grW+AeIrdp+ r kr +lg+f+taeeAa +++a+ kl+g Glyma.14G205600.1.p 125 KFRGVRQRQ-WGRWAAEIRDPT----RrKRLWLGTFDTAEEAATEYDRAAVKLKG 174 89****999.**********84....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 4.5E-88 | 8 | 282 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SMART | SM00380 | 6.5E-36 | 125 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 125 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-22 | 125 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.26E-31 | 125 | 182 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-30 | 125 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 125 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 126 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MSVHAKLKHH PMNLASPSSH FEDDPPCKTK TKTQRRLLRI IITDHDATDS DSSDEEQQQQ 60 QQKTRRVNRE ITQINMQLPL SHNSSFSPSS SYYSSASTSS EQNLKCKRPN KKPPPSSAEA 120 RRRNKFRGVR QRQWGRWAAE IRDPTRRKRL WLGTFDTAEE AATEYDRAAV KLKGPNAVTN 180 FPLAPEATAQ SPPLAADNLS SDGGASYSDL VASPTSVLAY ECDSTPFDGF RYLDVDAFGF 240 HIDAPLSLPE VNVNVALTCH HGKKQEEAFD EFDLDEFMTW PY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-19 | 126 | 183 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-19 | 126 | 183 | 6 | 64 | ATERF1 |
3gcc_A | 7e-19 | 126 | 183 | 6 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4543 | 0.0 | leaf| meristem| root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G205600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031250 | 0.0 | KT031250.1 Glycine max clone HN_CCL_182 AP2-EREBP transcription factor (Glyma02g40320.1_like1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544338.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | I1MBL7 | 0.0 | I1MBL7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G38610.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-32 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G205600.1.p |
Entrez Gene | 100800489 |