PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G204400.2.p
Common NameGLYMA_14G204400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 695aa    MW: 76740 Da    PI: 7.1342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G204400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-19287387199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l+++d +g+ W++++++  +++s++yvl+ G     +a +L++gD+v+F++++
  Glyma.14G204400.2.p 287 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLQFKDVKGNDWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLNAGDIVTFSRID 375
                          99**************************555556677***************9989999999***9.********************987 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            ++++v++ +r+
  Glyma.14G204400.2.p 376 -PGGKFVMGYRRA 387
                          .677678887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-29284390IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-20284386IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-23285386No hitNo description
SMARTSM010191.3E-20287387IPR003340B3 DNA binding domain
PfamPF023621.7E-16287387IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701287388IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MAMRENGRRG GLCDRVDSLD SATSAGWREC SFCNKTVHCG CIVSSSMFEY LDYGGIGCAT  60
CVKTSQLNLI RDTKNTIGSV RSIKNNARNR HTEHIDGRLL VDSAGKGNLM LLRRDVEASE  120
SIRWPRAERD GIDSCIGPNR QEDRRFSNVV KLSGHSLNFT TLDHNRPTWE TQTMHKSSSL  180
NMSLGTSSGN SVQPSALDIA ERRLEDKASF CPFPQGQRSL SISKSLMDGI TMNLEDSKGV  240
ISQERVARPP ANGKPKNLLH FRYWPRITGQ ELEKLSGDLK STIVPLFEKV LSASDAGRIG  300
RLVLPKSCAE AYFPPISQSE GLPLQFKDVK GNDWTFQFRF WPNNNSRMYV LEGVTPCIQA  360
MQLNAGDIVT FSRIDPGGKF VMGYRRASDS MDTQVDASTF AHSNGFATKE ATFSGATANL  420
HSGKSYPDLL QTRNGNGEPY LNGCSEHLRF GTGTADCLQT ENCEMVNNDL LQQTISVSEK  480
TLNIAPKSKR LLTHNEDAVE LRITWEEAQD LLHPPPSTMP SVETIEDKEF EEFEEPPVFG  540
KGTTINDPPS GSLSSASEKM SSMDLENIPV TSKDSKKRRI MEKLDSSAGA TTKHPRHCSG  600
CTCILCIQPP SGKGRHKPTC TTVRRQFKTL MKRKKQRESD ATQNDQIHHS DEGDTHGASR  660
EGAIASNLEN EGSLNRMDEL GTGQIDLNSH PDHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-662653942131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G204400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419236e-43AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544336.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_006596467.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A0R0GFV20.0A0A0R0GFV2_SOYBN; Uncharacterized protein
STRINGGLYMA14G38492.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-113high-level expression of sugar-inducible gene 2