![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.14G185100.1.p | ||||||||
Common Name | GLYMA_14G185100, LOC100814388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 38591.5 Da PI: 4.7986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 173 | 216 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Glyma.14G185100.1.p 173 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 216 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.18 | 167 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-15 | 171 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 173 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-11 | 173 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 174 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.63E-4 | 174 | 220 | No hit | No description |
CDD | cd04873 | 4.84E-4 | 262 | 325 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MELHDHDFLE ELMSLRRETW DTNPCSQENQ LFSNGWSFDC FDQNYHQAFP PNSFSCQQVP 60 QSYNHDYTYN EIYSSLLHEF SAPQVIDSSS YNTLDSTPHN TPPFLAQEDY PLSMMEEEDP 120 GFLGEELQCL DLQTTCKMES SHSPEMPIFN TTSSCVERKN RAKKLQGQPS KNLMAERRRR 180 KRLNDRLSML RSIVPKISKM DRTAILGDTI DYMKELLEKI NNLKQEIEVD SNMASIFKDV 240 KPNEIIVRNS PKFDVERRNV TTRVEICCAG KPGLLLSTVN TLETLGLEIQ QCVISCFNDF 300 TVQASCSEEL QQKTILSSED IKQALFRSAG YGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 175 | 182 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.14G185100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097325 | 0.0 | BT097325.1 Soybean clone JCVI-FLGm-16G7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544841.1 | 0.0 | transcription factor bHLH61 | ||||
Refseq | XP_028199138.1 | 0.0 | transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 2e-80 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A445H7S2 | 0.0 | A0A445H7S2_GLYSO; Transcription factor bHLH93 | ||||
TrEMBL | I1MB28 | 0.0 | I1MB28_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G36370.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 | Representative plant | OGRP2636 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-82 | beta HLH protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.14G185100.1.p |
Entrez Gene | 100814388 |
Publications ? help Back to Top | |||
---|---|---|---|
|