PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G178000.1.p
Common NameGLYMA_14G178000, LOC100797856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 325aa    MW: 35572.1 Da    PI: 7.5971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G178000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13119170155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.14G178000.1.p 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 170
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.81E-14117174No hitNo description
Gene3DG3DSA:4.10.280.103.1E-13118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-16118183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.581248324IPR002912ACT domain
CDDcd048730.00687249313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYGCNNK DFLYSLVGGG GGSQTHVGII NNNNIDHTLH ANWDSSSPSV  60
LQNVKDQWDS HSSPEACTVD QSLPAVFPPP SSSAEAAAMG RRKRRRTKSA KNKEEIENQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPSYV QRGDQASIIG GAINFVKELE QLLQCMKGQK  180
RTKEGGFSDS SPFAEFFMFP QYSTRATQSS SSSSRGYPGT CEANNNIARN HSWAVADIEV  240
TLVDGHANMK ILSKKRPGLL LKMVVGLQSL GLSILHLNVT TVDDMVLTSV SVKVEEGCQL  300
NTVDEIAAAV HQLSRTVQEE AVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.621930.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G178000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150366e-57AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544814.10.0transcription factor bHLH96
RefseqXP_028198704.10.0transcription factor bHLH96-like
SwissprotQ9C7T49e-92BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445H7900.0A0A445H790_GLYSO; Transcription factor bHLH96
TrEMBLI1MAX10.0I1MAX1_SOYBN; Uncharacterized protein
STRINGGLYMA14G35560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]