PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G174900.1.p
Common NameGLYMA_14G174900, LOC547675
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 250aa    MW: 28373.3 Da    PI: 9.4125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G174900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-07104123120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C+k+F+r  nL+ H+
  Glyma.14G174900.1.p 104 FSCPVCHKTFNRYNNLQMHM 123
                          89*****************9 PP
2zf-C2H2120.00064188210123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cgk+   k + ++H +++
  Glyma.14G174900.1.p 188 FTCRKCGKPLAVKGDWRTHEKNC 210
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-699126No hitNo description
Gene3DG3DSA:3.30.160.605.7E-6104123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.044104126IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576677.49E-5173208No hitNo description
SMARTSM00355160188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQIISKFHSF CLDMNQNQLQ PLPLLSSFLG SSPEESLLQN QNENPNACHA QVEDVTVALH  60
IGLPDHSSGS NSTNNHGFVN ATTQVPNNYW IPTQEQILIG FSHFSCPVCH KTFNRYNNLQ  120
MHMWGHGSQY RRGPDSLKRT HPRPLLDLPC YCCARGCKNN IEHARAKPLK DFRTLQTHYK  180
RKHGSKPFTC RKCGKPLAVK GDWRTHEKNC GKRWLCICGS DFKHKRSLKD HIKAFGFGHT  240
PFSSFSDGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139DSLKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.294600.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}.
UniprotTISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}.
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G174900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0952360.0BT095236.1 Soybean clone JCVI-FLGm-7C3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544798.10.0protein TRANSPARENT TESTA 1
RefseqXP_028200147.10.0protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-97TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A445H7T80.0A0A445H7T8_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLI1MAV00.0I1MAV0_SOYBN; Uncharacterized protein
STRINGGLYMA14G35140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-95C2H2 family protein
Publications ? help Back to Top
  1. Sagasser M,Lu GH,Hahlbrock K,Weisshaar B
    A. thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins.
    Genes Dev., 2002. 16(1): p. 138-49
    [PMID:11782451]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]