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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G146100.1.p | ||||||||
Common Name | GLYMA_14G146100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26758.8 Da PI: 5.1212 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.6e-19 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Glyma.14G146100.1.p 48 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 98 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.6E-13 | 48 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 49 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.42 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-32 | 49 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.78E-31 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRVSTQNNSE TESSSTSFLP PSPSPSPSSP PSSEFKTEKR NRESNKHPVY RGVRMRNWGK 60 WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS AILNFPELAA SLPRPVSLAP 120 RDVQAAAAKA AHMDLPSTSS SISSSLVPTT QSASSSSSSL SSLTSADLLP TASEELSEII 180 KLPRLETTSY ELGNEFVFMD SQDAWMYQPP IPWLHTTYDG SDADEFVVPE SGVVTSFESF 240 LWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 47 | 106 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28744 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G146100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ895345 | 0.0 | FJ895345.1 Glycine max TINY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237808.2 | 1e-175 | AP2 domain transcription factor TINY | ||||
Refseq | XP_028199679.1 | 1e-175 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 9e-69 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A445H5I6 | 1e-174 | A0A445H5I6_GLYSO; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | I1MA08 | 1e-174 | I1MA08_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G22740.1 | 1e-175 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-65 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G146100.1.p |
Publications ? help Back to Top | |||
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