PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G143400.2.p
Common NameGLYMA_14G143400, LOC100786044
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 991aa    MW: 109388 Da    PI: 5.1042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G143400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-172369148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Glyma.14G143400.2.p 23 KGQWTSEEDDILQNAVERFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 69
                         799****************************9.************986 PP
2Myb_DNA-binding65.88.1e-2175121148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W++eEde+++++vk++G++ W+tIa++++ gR +kqc++rw ++l
  Glyma.14G143400.2.p  75 KGPWSKEEDEIIIELVKKHGPKKWSTIAQHLP-GRIGKQCRERWVNHL 121
                          79******************************.************996 PP
3Myb_DNA-binding45.41.8e-14127169145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT eE++ l+++++ +G++ W+  ++ ++ gRt++ +k++w+
  Glyma.14G143400.2.p 127 KEAWTREEELALIHYHQIFGNK-WAELSKVIP-GRTDNAIKNHWN 169
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.541869IPR017930Myb domain
SMARTSM007176.6E-142271IPR001005SANT/Myb domain
PfamPF002491.0E-142369IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-152479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-212481IPR009057Homeodomain-like
CDDcd001671.05E-122669No hitNo description
PROSITE profilePS5129432.39770125IPR017930Myb domain
SuperFamilySSF466895.5E-3172168IPR009057Homeodomain-like
SMARTSM007171.6E-1974123IPR001005SANT/Myb domain
PfamPF002493.0E-1975121IPR001005SANT/Myb domain
CDDcd001672.17E-1777121No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2782128IPR009057Homeodomain-like
PROSITE profilePS5129419.277126176IPR017930Myb domain
SMARTSM007172.5E-14126174IPR001005SANT/Myb domain
PfamPF002497.1E-13127170IPR001005SANT/Myb domain
CDDcd001677.20E-11129169No hitNo description
Gene3DG3DSA:1.10.10.604.9E-21129176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MPTAWIFDPL LRRTTGPTRR STKGQWTSEE DDILQNAVER FKGKNWKKIA ECFKDRTDVQ  60
CLHRWQKVLN PELVKGPWSK EEDEIIIELV KKHGPKKWST IAQHLPGRIG KQCRERWVNH  120
LDPTIKKEAW TREEELALIH YHQIFGNKWA ELSKVIPGRT DNAIKNHWNS SVKKKLDSYL  180
ASGLLTQFES IPPHAGNLNQ PIRLQCSGDD NGSKWTEGEE ISDYSQGSAN AVYFPSATGT  240
SSADLQTGEA YRKNEECSLG KDHCPNQVSC SEPYYVSNDD VSICIPEIAH QEACTSQFVE  300
QQSHEPGNSI CGDCQFNFQS SPNVSSMVLG QESSELQRDF IAPSEICDMV NVPFPTSVEL  360
GVSTSMGTAS MDSLKPEHML ISDDECCRVL FSDAMNDGCF PPVDYNKSED IAEFSGYCSF  420
CRSCNIQISE TGGTSTAKLT CPQCSNNYKG ISSSQSVPPV LSIRDDRLGP SANSNQLFVT  480
EDHHFVSRAS ANFTYLNDIS CSPCVDGIGS AVMEKTNVHT EKEDSGSLCY EPPRFPSLDI  540
PFFSCDLVQS GSDMQQEFSP LGIRQFMMSS MNCLTPFRLW DSPSRDDNPD ALLKSAAKTF  600
TGTPSILKKR SRDLLSPLSD KRMDKKLETD ITSSMFTRNF SSLDVTFGDN ETRKADMPSS  660
SLQTQNSRAS VDDDNKENCG QTYKGEQVLE PIKSAILDEK NSQKGTVDGN SQHNVKQQPL  720
DSKMKINAAA GIEQQQSGVL VEHDVNDLSL SSPDQVGLNS DRGLDSSAKT PKSLNKSLEA  780
ASNQSGHLKL SSKSPCPRVN SCSPCVRAKE HEGLSVAVTR VQAPGDNSGE QTRRDGGFET  840
SSIFGGTPSA WKSPWFFNTF LSSPRLDTEI LIEDFGYFMS PGDRSYDALG WLKQVSDQTA  900
ATYANAQEIL ANGTPKALPK DASENDKDRD HENNYPANQP GNHSQLASNA LIERRTLDFS  960
ECETPGRGDN SKSSAMSFSS PSSYLMKGCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-66231766159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-66231766159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.627330.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G143400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596178.10.0transcription factor MYB3R-1 isoform X2
RefseqXP_028201179.10.0transcription factor MYB3R-1-like isoform X2
TrEMBLA0A0R0GDA70.0A0A0R0GDA7_SOYBN; Uncharacterized protein
STRINGGLYMA14G21523.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein