PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G140100.3.p
Common NameGLYMA_14G140100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 357aa    MW: 39591.8 Da    PI: 8.935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G140100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++++++  ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.14G140100.3.p  11 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 99 
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Glyma.14G140100.3.p 100 EILNSaTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138
                          ***9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-629160IPR003441NAC domain
PROSITE profilePS5100561.13311160IPR003441NAC domain
PfamPF023656.6E-2912138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEGNHEKEET LPPGFRFHPT DEELISYYLT NKISDSNFTG KAIADVDLNK CEPWELPEKA  60
KMGQKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE ILNSATSELV GMKKTLVFYK  120
GRAPRGEKSN WVMHEYRIHS KSSSFRTNKD EWVVCRVFRK SAGAKKFPSS SHIRALNLNP  180
FSLEVGPSIM PPPPMMHLAD PAAAAHFLYG RNYMMNPSEV AEVTRVLRGG GPTNVNVMNM  240
NLPMQYSHLN NPVAGGGGEG FTISGLNLNL GGTVATTTAQ AQQSLLRPMM PPPQPSPAHT  300
IAQVHHDFSS NMVTPNIALA ADNVGYGGEV ASANSHGNRY MGMDHCMDLD NYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-561016616171NO APICAL MERISTEM PROTEIN
1ut4_B3e-561016616171NO APICAL MERISTEM PROTEIN
1ut7_A3e-561016616171NO APICAL MERISTEM PROTEIN
1ut7_B3e-561016616171NO APICAL MERISTEM PROTEIN
3swm_A4e-561016619174NAC domain-containing protein 19
3swm_B4e-561016619174NAC domain-containing protein 19
3swm_C4e-561016619174NAC domain-containing protein 19
3swm_D4e-561016619174NAC domain-containing protein 19
3swp_A4e-561016619174NAC domain-containing protein 19
3swp_B4e-561016619174NAC domain-containing protein 19
3swp_C4e-561016619174NAC domain-containing protein 19
3swp_D4e-561016619174NAC domain-containing protein 19
4dul_A3e-561016616171NAC domain-containing protein 19
4dul_B3e-561016616171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G140100.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-93AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199935.10.0NAC domain-containing protein 59-like isoform X3
SwissprotQ9FLJ22e-81NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A445H5F30.0A0A445H5F3_GLYSO; NAC domain-containing protein 100
TrEMBLK7M6P20.0K7M6P2_SOYBN; Uncharacterized protein
STRINGGLYMA14G20276.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-112NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]