PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G140100.2.p
Common NameGLYMA_14G140100, LOC100811175
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 358aa    MW: 39719.9 Da    PI: 8.935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G140100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++++++  ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.14G140100.2.p  11 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 99 
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Glyma.14G140100.2.p 100 EILNSaTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 138
                          ***9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-639161IPR003441NAC domain
PROSITE profilePS5100561.25911161IPR003441NAC domain
PfamPF023656.6E-2912138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGNHEKEET LPPGFRFHPT DEELISYYLT NKISDSNFTG KAIADVDLNK CEPWELPEKA  60
KMGQKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE ILNSATSELV GMKKTLVFYK  120
GRAPRGEKSN WVMHEYRIHS KSSSFRTNKQ DEWVVCRVFR KSAGAKKFPS SSHIRALNLN  180
PFSLEVGPSI MPPPPMMHLA DPAAAAHFLY GRNYMMNPSE VAEVTRVLRG GGPTNVNVMN  240
MNLPMQYSHL NNPVAGGGGE GFTISGLNLN LGGTVATTTA QAQQSLLRPM MPPPQPSPAH  300
TIAQVHHDFS SNMVTPNIAL AADNVGYGGE VASANSHGNR YMGMDHCMDL DNYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-571016716171NO APICAL MERISTEM PROTEIN
1ut4_B1e-571016716171NO APICAL MERISTEM PROTEIN
1ut7_A1e-571016716171NO APICAL MERISTEM PROTEIN
1ut7_B1e-571016716171NO APICAL MERISTEM PROTEIN
3swm_A1e-571016719174NAC domain-containing protein 19
3swm_B1e-571016719174NAC domain-containing protein 19
3swm_C1e-571016719174NAC domain-containing protein 19
3swm_D1e-571016719174NAC domain-containing protein 19
3swp_A1e-571016719174NAC domain-containing protein 19
3swp_B1e-571016719174NAC domain-containing protein 19
3swp_C1e-571016719174NAC domain-containing protein 19
3swp_D1e-571016719174NAC domain-containing protein 19
4dul_A1e-571016716171NAC domain-containing protein 19
4dul_B1e-571016716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G140100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-93AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199933.10.0NAC domain-containing protein 59-like isoform X1
SwissprotQ9FLJ24e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLK7M6P10.0K7M6P1_SOYBN; Uncharacterized protein
STRINGGLYMA14G20276.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-115NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]