PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G140100.1.p
Common NameGLYMA_14G140100, LOC100811175
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 374aa    MW: 41593.1 Da    PI: 8.6894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G140100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-55271541128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++++++  ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.14G140100.1.p  27 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 115
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Glyma.14G140100.1.p 116 EILNSaTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 154
                          ***9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6324177IPR003441NAC domain
PROSITE profilePS5100561.25927177IPR003441NAC domain
PfamPF023657.3E-2928154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQKDKEVITK EGKDIEMEGN HEKEETLPPG FRFHPTDEEL ISYYLTNKIS DSNFTGKAIA  60
DVDLNKCEPW ELPEKAKMGQ KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS  120
ATSELVGMKK TLVFYKGRAP RGEKSNWVMH EYRIHSKSSS FRTNKQDEWV VCRVFRKSAG  180
AKKFPSSSHI RALNLNPFSL EVGPSIMPPP PMMHLADPAA AAHFLYGRNY MMNPSEVAEV  240
TRVLRGGGPT NVNVMNMNLP MQYSHLNNPV AGGGGEGFTI SGLNLNLGGT VATTTAQAQQ  300
SLLRPMMPPP QPSPAHTIAQ VHHDFSSNMV TPNIALAADN VGYGGEVASA NSHGNRYMGM  360
DHCMDLDNYW PSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-572618319174NAC domain-containing protein 19
3swm_B1e-572618319174NAC domain-containing protein 19
3swm_C1e-572618319174NAC domain-containing protein 19
3swm_D1e-572618319174NAC domain-containing protein 19
3swp_A1e-572618319174NAC domain-containing protein 19
3swp_B1e-572618319174NAC domain-containing protein 19
3swp_C1e-572618319174NAC domain-containing protein 19
3swp_D1e-572618319174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G140100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-93AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596169.20.0NAC domain-containing protein 59
RefseqXP_028199934.10.0NAC domain-containing protein 59-like isoform X2
SwissprotQ9FLJ25e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLK7M6P10.0K7M6P1_SOYBN; Uncharacterized protein
STRINGGLYMA14G20276.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-115NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]