PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G123900.1.p
Common NameGLYMA_14G123900, LOC100805277
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 328aa    MW: 37035.8 Da    PI: 4.9831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G123900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18102151255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp++   r r++lg+f taeeAa  +++a+  l+g
  Glyma.14G123900.1.p 102 KFRGVRQRP-WGKWAAEIRDPVQ---RVRIWLGTFKTAEEAALCYDNAAITLRG 151
                          89*******.**********755...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-29101159IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-21102160IPR016177DNA-binding domain
PROSITE profilePS5103222.629102159IPR001471AP2/ERF domain
PfamPF008473.6E-11102151IPR001471AP2/ERF domain
SMARTSM003806.6E-37102165IPR001471AP2/ERF domain
CDDcd000184.15E-32102158No hitNo description
PRINTSPR003673.2E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.2E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEQQNSILCK YTEHQTVMKK HMKSKDNTFC SPKVISISLI DPYATDSSSD EENVMRRRRV  60
KRYVNRIELQ PAFKPVTTRK RHAGDAATLR KPPAKVTNSC RKFRGVRQRP WGKWAAEIRD  120
PVQRVRIWLG TFKTAEEAAL CYDNAAITLR GPDALTNFGR SRPEETPEKE EMVEKEEFTS  180
GKPEMKVVVK PETQVSVSVS GCYDSGDECC LNLSSPTSVL QFSAEPYKPD EPFPGSTETR  240
TVVEECHGET VSFSDSSECI LKDMPWDDVF NFPVMFDEPL SHLFDETTPF SISDGFGDEK  300
FLPSSTLCQV DDYFQDILLG SDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21101158462ATERF1
3gcc_A3e-21101158462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G123900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544092.10.0ethylene-responsive transcription factor CRF1
RefseqXP_028199256.10.0ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE36e-54CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A445H7140.0A0A445H714_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLK7M7A30.0K7M7A3_SOYBN; Uncharacterized protein
STRINGGLYMA14G29040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-46cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]