PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G112400.1.p
Common NameGLYMA_14G112400, LOC100812596
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 413aa    MW: 45927 Da    PI: 6.0204
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.6e-083563892154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.14G112400.1.p 356 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 389
                          469*****************************87 PP
2ELK28.92.7e-10310331122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Glyma.14G112400.1.p 310 ELKHELKQGYKEKIVDIREEIL 331
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-18144188IPR005540KNOX1
PfamPF037902.5E-17147187IPR005540KNOX1
SMARTSM012561.7E-27198253IPR005541KNOX2
PfamPF037911.1E-20203252IPR005541KNOX2
PfamPF037899.5E-7310331IPR005539ELK domain
SMARTSM011886.1E-4310331IPR005539ELK domain
PROSITE profilePS512139.969310330IPR005539ELK domain
PROSITE profilePS5007111.726330393IPR001356Homeobox domain
SuperFamilySSF466894.71E-16332396IPR009057Homeodomain-like
SMARTSM003894.7E-11332397IPR001356Homeobox domain
CDDcd000861.52E-11333394No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25337394IPR009057Homeodomain-like
PfamPF059201.1E-17350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAYHNHNLSQ QDLPLHHFPN QSILPDQQQQ LPSSPEPNSK PPSDLQTAPN WLNDALLRTH  60
YTETTTNDAT TNTATVAAAA ANSNVNGSNF LNLNPGASDA QWPALHRHPG EVIDAGAGDS  120
MVEHADLKGG GGDGGGDAVN WQIGRWKAEI LQHPLYEQLL SAHVSCLRIA TPVDQLPRID  180
AQLAQSQNVV AKYAAFGHNN IVADDKELDQ FMSHYVLLLC SFKEQLQQHV RVHAMEAVMA  240
CWDIEQSLQS LTGVSPGEGT GATMSDDEDD QVDSDANLFD SSFDGADGMG FGPLVPTESE  300
RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP  360
TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSTSTV LKSKRKRYSH QN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386406RKRNWHSNPSTSTVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.169400.0cotyledon| flower| leaf| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Maximally expressed in sepals, petals and fully expanded leaves. Also expressed in other flower organs and in developing leaves. Low level expression in stem internodes.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G112400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311740.0KT031174.1 Glycine max clone HN_CCL_151 homeodomain/HOMEOBOX transcription factor (Glyma17g32980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622540.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A445H4Q90.0A0A445H4Q9_GLYSO; Homeobox protein knotted-1-like 3 isoform B
TrEMBLI1M9G10.0I1M9G1_SOYBN; Uncharacterized protein
STRINGGLYMA14G13750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-167KNOTTED1-like homeobox gene 3