PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G106200.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 250aa    MW: 28460.3 Da    PI: 4.2776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G106200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.8e-162977355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr +k +g+Wv+eIr p++   r r++lg+++t  +Aa+a + a  +l+g
  Glyma.14G106200.1.p 29 YKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQVKAARAFDVALYCLRG 77
                         9****999.**********933...5**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.5492885IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-192886IPR016177DNA-binding domain
SMARTSM003805.8E-302891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-282886IPR001471AP2/ERF domain
PRINTSPR003671.8E-82940IPR001471AP2/ERF domain
PfamPF008475.9E-92977IPR001471AP2/ERF domain
CDDcd000184.35E-282987No hitNo description
PRINTSPR003671.8E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASVDSSSFS SCKNDSFSSN YSIDTCKMYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDT  60
QVKAARAFDV ALYCLRGKSA SFNFPDTPRH LEINMVLPCD IQQQPLSHPE IQEIASKFAN  120
NDHVPLEEES AFQEQEQDPS MESQSDESKS ANTITEMSNF PNIYDGGTHT NVQVDQLQGD  180
WDSMDWTFFN MLDDLNGSDF GLYLGPDKLH PGEFLCPTQA PMLFHEDEIE GDDDHDAFSN  240
HSLLWSWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1429851572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G106200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981246.10.0ethylene-responsive transcription factor ERF017-like
RefseqXP_028200586.10.0ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0B2P7H40.0A0A0B2P7H4_GLYSO; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0R0GBL50.0A0A0R0GBL5_SOYBN; Uncharacterized protein
STRINGGLYMA14G12505.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]