PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G096800.3.p
Common NameGLYMA_14G096800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 365aa    MW: 41346 Da    PI: 4.5273
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G096800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.5e-34461372102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ed+++++++sws   nsfvv+d+++f+ ++Lp+yFkh nf+SF+RQLn YgF+kv+ ++         weF+++ F +g++
  Glyma.14G096800.3.p  46 FLSKIFDMVEDSSTDSIVSWSMARNSFVVWDSHKFSADILPRYFKHGNFSSFIRQLNAYGFRKVDPDR---------WEFANEGFLAGQR 126
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Glyma.14G096800.3.p 127 HLLKTIKRRRN 137
                          ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5742135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3342135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MYMERIRVKE EEAVTCGGGS SSSSSSSSSF SPQPMEGLHE VGPPPFLSKI FDMVEDSSTD  60
SIVSWSMARN SFVVWDSHKF SADILPRYFK HGNFSSFIRQ LNAYGFRKVD PDRWEFANEG  120
FLAGQRHLLK TIKRRRNVSQ SLQQKGGSGA CVEVGEFGLE GELERLKRDR NILMAEIVRL  180
RHQQLNSREQ LNSMETRLQA TEKKQQQMMS FLAKALSNPS FTKQLVQKTP QSREVLGVEI  240
NRKRRLTASP SVENLQQDDQ DLATLDYPSH DRDLATMETD MDTFFSPAYD NELSSETNEP  300
ASISVEDTIL EDFLNKDLVT WNPEDEVIIG DSSQVDVPVE DLVANPDDWS EQLQDLVDHM  360
DYLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-244413518120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G096800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311610.0KT031161.1 Glycine max clone HN_CCL_33 heat shock transcription factor (Glyma14g11030.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304416.20.0heat stress transcription factor Hsf-30
RefseqXP_028199856.10.0heat stress transcription factor A-2-like
SwissprotP411521e-123HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A445H3Z10.0A0A445H3Z1_GLYSO; Heat shock factor protein HSF30 isoform A
TrEMBLI1M9390.0I1M939_SOYBN; Uncharacterized protein
STRINGGLYMA14G11030.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-114heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]