PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G095900.1.p
Common NameGLYMA_14G095900, LOC100783557
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 409aa    MW: 45129 Da    PI: 9.4116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-057092123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.14G095900.1.p 70 FVCEICHKGFQRDQNLQLHRRGH 92
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.52E-66992No hitNo description
Gene3DG3DSA:3.30.160.605.9E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6377092IPR007087Zinc finger, C2H2
SMARTSM003550.0467092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110112142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.52E-6142167No hitNo description
SMARTSM00355250147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSNLTSASSE ISASSGIRND NGSSLYAQYS STSISQEPQP KKKRSLPGHP DPEAEVIALT  60
PRTLLATNRF VCEICHKGFQ RDQNLQLHRR GHNLPWKLKK KSSKDDVRKK VYVCPEATCV  120
HHDPSRALGD LTGIKKHFFR KHGEKKWRCE KCSKLYAVQS DWKAHSKICG TKEYKCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESSRVVNPHP LLSTQFRSHG LQLQAPSLLK REHDHFNLLT  240
SEIPSWLTSP TVVEEAILLN NQTIRTTSDY FSKPQLFPTA HVNNNHSLLH DQNPNPNTTT  300
TTTFLSSLSS FPNYSTSSSS SPHMSAALLQ KASQIGETVS SAPSQAMLVR PHLLLQQQVH  360
VPECTTTTAI ATTGYNINMA SSSAVSGMVI MPSREEIGAL GFASGMAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34143205365Zinc finger protein JACKDAW
5b3h_F4e-34143205365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKKKSSKDDVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.263620.0cotyledon| leaf| meristem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G095900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358911e-141AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
GenBankAP0150361e-141AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596020.10.0protein indeterminate-domain 7
RefseqXP_028201245.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-112IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A445H4160.0A0A445H416_GLYSO; Protein indeterminate-domain 7
TrEMBLI1M9330.0I1M933_SOYBN; Indeterminate domain protein
STRINGGLYMA14G10940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]