PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 365aa MW: 40726.3 Da PI: 7.3385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G090900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.2e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl Glyma.14G090900.1.p 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.5	1.1e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd+++ + G++ W+ Ia+ ++ gRt++++k++w++ Glyma.14G090900.1.p 70 GFSVEEDDIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 6899**************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.903	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	5.43E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-13	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-16	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	2.51E-10	16	62	No hit	No description
PROSITE profile	PS51294	15.552	67	117	IPR017930	Myb domain
SMART	SM00717	1.6E-10	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-10	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-23	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSVEEDDIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRREPRNRGN YNSVKQENDV NRGSGTTDGD SSSLSLLQEN GSTTHHQEQH QQQPCWPQNI 180 NNMPVLPLQV PLPYKNQGPC FNDQDSLKKL LIKLGGRFSG DSYHPTLDGL NLEFSSHGQQ 240 IYQEQVHVGS SAACISATIN NNNEVQFAQT GQYPGVDNLV QGQGGNFTPS FEEMVSSSNY 300 PDGLEFLYNE GMIDHKIIDT TTTTTWGETS TPIYHHHDSL ASTYQGQGVI QECVLQDFSY 360 PRAQ*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSVEEDDIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRREPRNRGN YNSVKQENDV NRGSGTTDGD SSSLSLLQEN GSTTHHQEQH QQQPCWPQNI  180
NNMPVLPLQV PLPYKNQGPC FNDQDSLKKL LIKLGGRFSG DSYHPTLDGL NLEFSSHGQQ  240
IYQEQVHVGS SAACISATIN NNNEVQFAQT GQYPGVDNLV QGQGGNFTPS FEEMVSSSNY  300
PDGLEFLYNE GMIDHKIIDT TTTTTWGETS TPIYHHHDSL ASTYQGQGVI QECVLQDFSY  360
PRAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-23	14	117	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269\|PubMed:16461581}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16461581}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G090900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006596007.1	0.0	transcription factor RAX3
Refseq	XP_028199904.1	0.0	transcription factor RAX3-like
Swissprot	Q9M2Y9	3e-82	RAX3_ARATH; Transcription factor RAX3
TrEMBL	A0A445H3T6	0.0	A0A445H3T6_GLYSO; Transcription factor RAX3
TrEMBL	I1M8X8	0.0	I1M8X8_SOYBN; Uncharacterized protein
STRING	GLYMA14G10340.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	6e-78	myb domain protein 84

Link Out ? help Back to Top
Phytozome	Glyma.14G090900.1.p
Entrez Gene	100815092

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]