PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G089200.1.p
Common NameGLYMA_14G089200, LOC100808138
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 600aa    MW: 65992.8 Da    PI: 7.3108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G089200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16227286155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.14G089200.1.p 227 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 286
                          78*******************988886678446*************************98 PP
2AP246.11.2e-14331380355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.14G089200.1.p 331 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 380
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-13227286IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-16227295IPR016177DNA-binding domain
CDDcd000184.76E-21227293No hitNo description
PROSITE profilePS5103218.782228294IPR001471AP2/ERF domain
SMARTSM003803.8E-27228300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15228294IPR001471AP2/ERF domain
PRINTSPR003674.3E-6229240IPR001471AP2/ERF domain
CDDcd000181.53E-24329390No hitNo description
SuperFamilySSF541711.5E-17329389IPR016177DNA-binding domain
PROSITE profilePS5103219.203330388IPR001471AP2/ERF domain
SMARTSM003806.0E-33330394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18330388IPR001471AP2/ERF domain
PfamPF008471.6E-9331380IPR001471AP2/ERF domain
PRINTSPR003674.3E-6370390IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MMPTSSPKLE DFLSGATMGA QDYGTHEREA MALSLDSIYY SNQNAEPETN RDHSSSLDLL  60
SDPFRHQNHS YYSGLGIYQV EEEETKEQPP PPPHHVAVCC SQVPQVVEGI ACFKNWVPPR  120
EFSSSTQQNL EQDQVNSSRS GGLGEDNNNG ASGNIGVGSS VGCGELQSLS LSMSPGSQSS  180
CVTVPTQISS SGTDSVTVDA KKRGSSKLGQ KQPVHRKSID TFGQRTSQYR GVTRHRWTGR  240
YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGPSTH INFSLENYQT  300
ELEEMKNMSR QEYVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  360
FSTQEEAAEA YDIAAIKFRG LNAVTNFDIT RYDVERIMAS NTLLAGELAR RNKNSEPRTE  420
AIEYNVVSSQ RVISNREEVH EAVNNNNNNE NGSSSDWKMG LYHHQQQQQQ SNNCDQKTMK  480
CGNYNRGGGG AAAAFSVSLQ DLIGIESVVG SSQGMMNEST KIGTHFSNPS SLVTSLSSSR  540
EGSPDKTGPT LLFPKPPMGS KIVTSPTIAN GVTVGSWFPS QMRPVSMSHL PFFAAWSDT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.393020.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G089200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622036.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-150CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK7M5S10.0K7M5S1_SOYBN; Uncharacterized protein
STRINGGLYMA14G10130.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]