PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 175aa MW: 19823.3 Da PI: 10.2475

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G084700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.3e-17	44	93	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Glyma.14G084700.1.p 44 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 93 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.6E-36	44	107	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.036	44	101	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-21	44	102	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.8E-30	45	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-11	45	56	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-10	45	93	IPR001471	AP2/ERF domain
CDD	cd00018	1.71E-27	45	103	No hit	No description
PRINTS	PR00367	1.4E-11	83	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEDRDHCCSN NSTMITTTKK RTGRRSPTSD KLKNQHREKQ SMKPYRGIRM RKWGKWVAEI 60 REPNKRSRIW LGSYTTPVAA ARAYDTAVFY LRGPTARLNF PELLFQDDDQ EGSDSVQHGA 120 AGNMSADSIR RKATQVGARV DALQTALHHH APSTNSLNLK PDLNEFPKLE ELQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-15	43	101	4	63	ATERF1
3gcc_A	5e-15	43	101	4	63	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5770	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| pod\| root\| seed coat\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269\|PubMed:9192694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00188	DAP	Transfer from AT1G46768	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G084700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF514908	0.0	AF514908.1 Glycine max dehydration responsive element binding protein (DREB1) mRNA, complete cds.
GenBank	KT031088	0.0	KT031088.1 Glycine max clone HN_CCL_2 AP2-EREBP transcription factor (Glyma14g09320.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235779.1	1e-130	dehydration responsive element binding protein
Refseq	XP_028201161.1	1e-130	ethylene-responsive transcription factor RAP2-1-like
Swissprot	Q8LC30	3e-50	RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBL	A0A445H3G5	1e-129	A0A445H3G5_GLYSO; Ethylene-responsive transcription factor RAP2-1
TrEMBL	Q7Y0Y9	1e-129	Q7Y0Y9_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA14G09320.1	1e-129	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46768.1	1e-52	related to AP2 1

Link Out ? help Back to Top
Phytozome	Glyma.14G084700.1.p
Entrez Gene	547642

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]