PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G083700.1.p
Common NameGLYMA_14G083700, LOC100782841
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 371aa    MW: 42035.9 Da    PI: 7.9102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G083700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76e-36251172103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k
  Glyma.14G083700.1.p  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEK 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Glyma.14G083700.1.p 106 NLLCEIHRRKTH 117
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.33E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MALLLDNCES ILLSLDTHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKNLLCE IHRRKTHHQH  120
HQQVQAMNNH HHHHKFGLNV SSIFPFHNNR LSVSPSHDSD EVIIPNWCDS PPRGVAGVNN  180
NNSSSNNYNT VTALSEDNER LRRSNNMLMS ELAHMKKLYN DIIYFVQNHV KPVAPSNNNN  240
FPSFLLCSDN SNINNNTSPQ TQTQAQASPM SNVSTVQRQL KQFVGCYSNN TKQARAVNSP  300
TNSSITIVEE EASSNSCKTK LFGVSLQSKK RVHPEYGSNN VLQSSETNKA RLALENDELL  360
GLNLMPPSTC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212111617122Heat shock factor protein 1
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84660.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G083700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933310.0BT093331.1 Soybean clone JCVI-FLGm-24E17 unknown mRNA.
GenBankZ469560.0Z46956.1 G.max mRNA for heat shock transcription factor 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241604.10.0heat stress transcription factor B-4-like
RefseqXP_028199041.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-111HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0B2RMC60.0A0A0B2RMC6_GLYSO; Heat stress transcription factor B-4
TrEMBLC6T7A70.0C6T7A7_SOYBN; Uncharacterized protein
STRINGGLYMA14G09190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-108heat shock transcription factor B4
Publications ? help Back to Top
  1. Czarnecka-Verner E,Yuan CX,Fox PC,Gurley WB
    Isolation and characterization of six heat shock transcription factor cDNA clones from soybean.
    Plant Mol. Biol., 1995. 29(1): p. 37-51
    [PMID:7579166]