PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079200.1.p
Common NameGLYMA_14G079200, LOC100814386
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 601aa    MW: 67298.6 Da    PI: 8.444
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-1720106799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           s++++s+rl+lp  f+  ++g   +   ++l+ +sg+ W+v+l   k+++  ++  GW+ Fv +++L+ g+ +vF+++g+  f  +v++
  Glyma.14G079200.1.p  20 YSSAFSSHRLRLPDGFVCYMEGRAYG--SVSLTGPSGNIWTVQL--IKQDNDLFFHHGWSTFVVDHRLECGELLVFRYEGHLHF--TVQI 103
                          4899************9666777666..5***************..9*******************************987666..9**9 PP

                          E-S CS
                   B3  97 frk 99 
                          f+k
  Glyma.14G079200.1.p 104 FDK 106
                          997 PP
2B345.81.1e-14255346195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  F + n++k+gD+++F+l+++ e
  Glyma.14G079200.1.p 255 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFIRGNNIKVGDICIFELVRECE 342
                          556667778888899*******98996..46999***************954566666799***********************998655 PP

                          E..EEE CS
                   B3  90 felvvk 95 
                             +v+
  Glyma.14G079200.1.p 343 L--RVR 346
                          4..555 PP
3B348.91.2e-15480568190
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k++++ +v+ s  l +p +f ++h   ++ ++++tl++++g  W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e
  Glyma.14G079200.1.p 480 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVTLRNSRGGCWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCE 567
                          89999999***************9994..334569***************77666666799***********************987544 PP

                          E CS
                   B3  90 f 90 
                           
  Glyma.14G079200.1.p 568 M 568
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2110109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2012109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.26714107IPR003340B3 DNA binding domain
SMARTSM010195.0E-1116107IPR003340B3 DNA binding domain
PfamPF023625.6E-1521106IPR003340B3 DNA binding domain
CDDcd100171.56E-1621105No hitNo description
Gene3DG3DSA:2.40.330.105.1E-20250348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-21250348IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-18253347No hitNo description
PfamPF023622.4E-11255347IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717255351IPR003340B3 DNA binding domain
SMARTSM010196.2E-10255351IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-22472573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-23473574IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-18478572No hitNo description
PfamPF023625.6E-13480567IPR003340B3 DNA binding domain
SMARTSM010197.9E-12480576IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619480576IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MGCDCGGKLN VRKPHFYEVY SSAFSSHRLR LPDGFVCYME GRAYGSVSLT GPSGNIWTVQ  60
LIKQDNDLFF HHGWSTFVVD HRLECGELLV FRYEGHLHFT VQIFDKDACE KEAAFHSECS  120
QSSSDFDNIK GQKRDRKENS SLHIVVDGVP KKMRGSTNEN QELELGVGKE LLLYDVVRPI  180
SMFRENEETS KTCSANDVPV PFHMENSNED EEADILYRSG NDDHHYILSG VSLSNVSAHD  240
EKKVAQSFIS SFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV  300
NSVPTTRVHT SHTLCGGWMA FIRGNNIKVG DICIFELVRE CELRVRIAEV GKDGRDCQVG  360
NVAMTRPSAG HAVSSKCMSM NPKVNSKCIR KVDLSDKKWS KIGQETILSI DLKKSSRASN  420
TSKKMGLCPQ SKAAHKKLAA PRRHRVEDEL SSQAKAGLRM LFALDEQRVA QAFSSPFPSF  480
VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVTLRNSRG GCWTVNSVPD AKGRTVHTFC  540
GGWMAFVRDN DINFGDTCIF ELVAQCEMQV YISGVGKEGL DHQNGHLKLT NRLANVPSTC  600
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205430.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-138AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595949.10.0B3 domain-containing protein Os01g0723500
TrEMBLK7M5J00.0K7M5J0_SOYBN; Uncharacterized protein
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein