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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G079100.7.p | ||||||||
Common Name | GLYMA_14G079100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 33454.7 Da PI: 8.4624 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.8e-18 | 5 | 80 | 16 | 97 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l lpk+f ++ + k+ + +tl+ + g W++ + + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f v +f Glyma.14G079100.7.p 5 LALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 80 689****85544..558889***************..9********************************99999..77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.974 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-10 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-20 | 4 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.95E-20 | 4 | 81 | No hit | No description |
Pfam | PF02362 | 1.3E-14 | 5 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-21 | 5 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MWLFLALPKT FSDNLKKKLP ENVTLKGPGG VMWNIGMTTR DDTLYFGHGW EQFVKDHCLK 60 ENDFLVFKYN GESQFDVLIF NGWSLCEKAG SYFVRKCGHT EIDHAGGSLN KKRDTDNDSL 120 EEGNIPSNAG VECALHEKSA HVNGTKEPID VPPETPPTEN TFNAGVESSG VEQFTPDGGV 180 TLAAVPSETA NGKRIRNIVS AVKHVHTKRK GRPAKWHVRE RTLDWVAALE AEPVSASRSG 240 TYEVYKSNRR PVTDDETRKI ESLAKAACTD DSIYVVMKPT HVYKRFFVFS TSIYRRRK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1879 | 0.0 | pod| somatic embryo |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G079100.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098236 | 0.0 | BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595619.1 | 0.0 | uncharacterized protein LOC100813851 isoform X2 | ||||
Refseq | XP_028199088.1 | 0.0 | B3 domain-containing protein REM16-like isoform X2 | ||||
TrEMBL | A0A0R0GB29 | 0.0 | A0A0R0GB29_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08630.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G079100.7.p |