PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079100.6.p
Common NameGLYMA_14G079100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 332aa    MW: 37449 Da    PI: 7.1939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079100.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-1933113997
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          d+   + l lpk+f ++ +  k+ +  +tl+ + g  W++ +  + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.14G079100.6.p  33 DYD--QHLALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 113
                          443..3499*****85555..558889***************..9********************************99999..77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.28423116IPR003340B3 DNA binding domain
CDDcd100173.50E-2025114No hitNo description
Gene3DG3DSA:2.40.330.101.6E-2225114IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.9E-1726116IPR003340B3 DNA binding domain
PfamPF023623.1E-1534113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG  60
PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGWSLCE  120
KAGSYFVRKC GHTEIDHAGG SLNKKRDTDN DSLEEGNIPS NAGVECALHE KSAHVNGTKE  180
PIDVPPETPP TENTFNAGVE SSGVEQFTPD GGVTLAAVPS ETANGKRIRN IVSAVKHVHT  240
KRKGRPAKWH VRERTLDWVA ALEAEPVSAS RSGTYEVYKS NRRPVTDDET RKIESLAKAA  300
CTDDSIYVVM KPTHVYKRFF VFSTSIYRRR K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.18790.0pod| somatic embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079100.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595618.10.0uncharacterized protein LOC100813851 isoform X1
RefseqXP_028199087.10.0B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A0R0GKJ40.0A0A0R0GKJ4_SOYBN; Uncharacterized protein
STRINGGLYMA14G08630.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-42B3 family protein