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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G079100.5.p | ||||||||
Common Name | GLYMA_14G079100, LOC100813851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 413aa MW: 45793.7 Da PI: 9.2752 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.8e-18 | 5 | 80 | 16 | 97 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l lpk+f ++ + k+ + +tl+ + g W++ + + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f v +f Glyma.14G079100.5.p 5 LALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 80 689****85544..558889***************..9********************************99999..77666 PP | |||||||
2 | B3 | 35 | 2.6e-11 | 276 | 356 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 v++p +v k+ +++ + + +h ++ +s++++l+ + +W +++y++ ++ lt+GWk+F + +L+egD +vFk g+ Glyma.14G079100.5.p 276 VMKPTHVYKRFFVSIRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDSNLEEGDACVFKPAGQ 356 67888999999999999999888655..67789988855.58*******99999999***********************7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.3E-10 | 1 | 83 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.974 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-20 | 4 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.31E-20 | 4 | 81 | No hit | No description |
Pfam | PF02362 | 2.2E-14 | 5 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-21 | 5 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.019 | 273 | 371 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-11 | 273 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-14 | 273 | 357 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-9 | 276 | 356 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-11 | 276 | 369 | No hit | No description |
PROSITE profile | PS50863 | 8.839 | 314 | 371 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MWLFLALPKT FSDNLKKKLP ENVTLKGPGG VMWNIGMTTR DDTLYFGHGW EQFVKDHCLK 60 ENDFLVFKYN GESQFDVLIF NGWSLCEKAG SYFVRKCGHT EIDHAGGSLN KKRDTDNDSL 120 EEGNIPSNAG VECALHEKSA HVNGTKEPID VPPETPPTEN TFNAGVESSG VEQFTPDGGV 180 TLAAVPSETA NGKRIRNIVS AVKHVHTKRK GRPAKWHVRE RTLDWVAALE AEPVSASRSG 240 TYEVYKSNRR PVTDDETRKI ESLAKAACTD DSIYVVMKPT HVYKRFFVSI RGTWIGKHIS 300 PSSQDVILRM GKGEWIARYS YNNIRNNGGL TGGWKHFSLD SNLEEGDACV FKPAGQINNT 360 FVIDMSIFRV VPETVPLTPM SRGTRTGTRT GTGRRGRKPA TMKSIQTQLS SP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.1879 | 0.0 | pod| somatic embryo |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G079100.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098236 | 0.0 | BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595619.1 | 0.0 | uncharacterized protein LOC100813851 isoform X2 | ||||
Refseq | XP_028199088.1 | 0.0 | B3 domain-containing protein REM16-like isoform X2 | ||||
TrEMBL | A0A0R0GHI1 | 0.0 | A0A0R0GHI1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08630.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G079100.5.p |
Entrez Gene | 100813851 |