PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079100.5.p
Common NameGLYMA_14G079100, LOC100813851
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 413aa    MW: 45793.7 Da    PI: 9.2752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.8e-185801697
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         l lpk+f ++ +  k+ +  +tl+ + g  W++ +  + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.14G079100.5.p  5 LALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 80
                         689****85544..558889***************..9********************************99999..77666 PP
2B3352.6e-11276356487
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          v++p +v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  + +L+egD +vFk  g+
  Glyma.14G079100.5.p 276 VMKPTHVYKRFFVSIRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDSNLEEGDACVFKPAGQ 356
                          67888999999999999999888655..67789988855.58*******99999999***********************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.3E-10183IPR003340B3 DNA binding domain
PROSITE profilePS5086314.974183IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-20481IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-20481No hitNo description
PfamPF023622.2E-14579IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-21581IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.019273371IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-11273358IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-14273357IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-9276356IPR003340B3 DNA binding domain
CDDcd100171.13E-11276369No hitNo description
PROSITE profilePS508638.839314371IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MWLFLALPKT FSDNLKKKLP ENVTLKGPGG VMWNIGMTTR DDTLYFGHGW EQFVKDHCLK  60
ENDFLVFKYN GESQFDVLIF NGWSLCEKAG SYFVRKCGHT EIDHAGGSLN KKRDTDNDSL  120
EEGNIPSNAG VECALHEKSA HVNGTKEPID VPPETPPTEN TFNAGVESSG VEQFTPDGGV  180
TLAAVPSETA NGKRIRNIVS AVKHVHTKRK GRPAKWHVRE RTLDWVAALE AEPVSASRSG  240
TYEVYKSNRR PVTDDETRKI ESLAKAACTD DSIYVVMKPT HVYKRFFVSI RGTWIGKHIS  300
PSSQDVILRM GKGEWIARYS YNNIRNNGGL TGGWKHFSLD SNLEEGDACV FKPAGQINNT  360
FVIDMSIFRV VPETVPLTPM SRGTRTGTRT GTGRRGRKPA TMKSIQTQLS SP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.18790.0pod| somatic embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595619.10.0uncharacterized protein LOC100813851 isoform X2
RefseqXP_028199088.10.0B3 domain-containing protein REM16-like isoform X2
TrEMBLA0A0R0GHI10.0A0A0R0GHI1_SOYBN; Uncharacterized protein
STRINGGLYMA14G08630.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-34B3 family protein