![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.14G079100.4.p | ||||||||
Common Name | GLYMA_14G079100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 297aa MW: 33429.5 Da PI: 6.8845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 33 | 105 | 9 | 87 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 d+ + l lpk+f ++ + k+ + +tl+ + g W++ + + ++++ +++ GW++Fvk++ Lke+Df+vFk++g Glyma.14G079100.4.p 33 DYD--QHLALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGG 105 444..3499*****85555..558889***************..9******************************9874 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.41E-19 | 21 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.408 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.64E-18 | 25 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.2E-19 | 25 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-12 | 26 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-14 | 34 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG 60 PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGGSLNKK RDTDNDSLEE 120 GNIPSNAGVE CALHEKSAHV NGTKEPIDVP PETPPTENTF NAGVESSGVE QFTPDGGVTL 180 AAVPSETANG KRIRNIVSAV KHVHTKRKGR PAKWHVRERT LDWVAALEAE PVSASRSGTY 240 EVYKSNRRPV TDDETRKIES LAKAACTDDS IYVVMKPTHV YKRFFVENIS LHHLKM* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.1879 | 0.0 | pod| somatic embryo |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.14G079100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098236 | 0.0 | BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595618.1 | 0.0 | uncharacterized protein LOC100813851 isoform X1 | ||||
Refseq | XP_028199087.1 | 0.0 | B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A0R0GME5 | 0.0 | A0A0R0GME5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08630.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-26 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.14G079100.4.p |