PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079100.3.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 411aa    MW: 45860.6 Da    PI: 8.7451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-1733105987
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          d+   + l lpk+f ++ +  k+ +  +tl+ + g  W++ +  + ++++ +++ GW++Fvk++ Lke+Df+vFk++g 
  Glyma.14G079100.3.p  33 DYD--QHLALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGG 105
                          443..3499*****85555..558889***************..9******************************9874 PP
2B3352.6e-11274354487
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          v++p +v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  + +L+egD +vFk  g+
  Glyma.14G079100.3.p 274 VMKPTHVYKRFFVSIRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDSNLEEGDACVFKPAGQ 354
                          67888999999999999999888655..67789988855.58*******99999999***********************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1921106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.40823116IPR003340B3 DNA binding domain
CDDcd100171.50E-1725106No hitNo description
Gene3DG3DSA:2.40.330.109.3E-1925106IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1226114IPR003340B3 DNA binding domain
PfamPF023626.0E-1435105IPR003340B3 DNA binding domain
SMARTSM010190.019271369IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-11271356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-14271355IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-11274367No hitNo description
PfamPF023623.9E-9274354IPR003340B3 DNA binding domain
PROSITE profilePS508638.839312369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG  60
PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGGSLNKK RDTDNDSLEE  120
GNIPSNAGVE CALHEKSAHV NGTKEPIDVP PETPPTENTF NAGVESSGVE QFTPDGGVTL  180
AAVPSETANG KRIRNIVSAV KHVHTKRKGR PAKWHVRERT LDWVAALEAE PVSASRSGTY  240
EVYKSNRRPV TDDETRKIES LAKAACTDDS IYVVMKPTHV YKRFFVSIRG TWIGKHISPS  300
SQDVILRMGK GEWIARYSYN NIRNNGGLTG GWKHFSLDSN LEEGDACVFK PAGQINNTFV  360
IDMSIFRVVP ETVPLTPMSR GTRTGTRTGT GRRGRKPATM KSIQTQLSSP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.18790.0pod| somatic embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595618.10.0uncharacterized protein LOC100813851 isoform X1
RefseqXP_028199087.10.0B3 domain-containing protein REM16-like isoform X1
TrEMBLC6TKM00.0C6TKM0_SOYBN; Uncharacterized protein
STRINGGLYMA14G08630.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-46B3 family protein