PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079100.1.p
Common NameGLYMA_14G079100, LOC100813851
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 446aa    MW: 49788 Da    PI: 8.2254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.3e-1933113997
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          d+   + l lpk+f ++ +  k+ +  +tl+ + g  W++ +  + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f   v +f
  Glyma.14G079100.1.p  33 DYD--QHLALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 113
                          443..3499*****85555..558889***************..9********************************99999..77666 PP
2B334.83e-11309389487
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          v++p +v k+  +++  + + +h ++  +s++++l+  +  +W  +++y++ ++   lt+GWk+F  + +L+egD +vFk  g+
  Glyma.14G079100.1.p 309 VMKPTHVYKRFFVSIRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDSNLEEGDACVFKPAGQ 389
                          67888999999999999999888655..67789988855.58*******99999999***********************7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.28423116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-2225114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.14E-2025114No hitNo description
SMARTSM010198.9E-1726116IPR003340B3 DNA binding domain
PfamPF023625.2E-1535112IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-11306391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-14306390IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.019306404IPR003340B3 DNA binding domain
PfamPF023624.4E-9309389IPR003340B3 DNA binding domain
CDDcd100171.51E-11309402No hitNo description
PROSITE profilePS508638.839347404IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG  60
PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGWSLCE  120
KAGSYFVRKC GHTEIDHAGG SLNKKRDTDN DSLEEGNIPS NAGVECALHE KSAHVNGTKE  180
PIDVPPETPP TENTFNAGVE SSGVEQFTPD GGVTLAAVPS ETANGKRIRN IVSAVKHVHT  240
KRKGRPAKWH VRERTLDWVA ALEAEPVSAS RSGTYEVYKS NRRPVTDDET RKIESLAKAA  300
CTDDSIYVVM KPTHVYKRFF VSIRGTWIGK HISPSSQDVI LRMGKGEWIA RYSYNNIRNN  360
GGLTGGWKHF SLDSNLEEGD ACVFKPAGQI NNTFVIDMSI FRVVPETVPL TPMSRGTRTG  420
TRTGTGRRGR KPATMKSIQT QLSSP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.18790.0pod| somatic embryo
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982360.0BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595618.10.0uncharacterized protein LOC100813851 isoform X1
RefseqXP_028199087.10.0B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A445H3110.0A0A445H311_GLYSO; B3 domain-containing protein REM16
TrEMBLK7M5I90.0K7M5I9_SOYBN; Uncharacterized protein
STRINGGLYMA14G08630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Representative plantOGRP1491534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-42B3 family protein