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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G070700.2.p | ||||||||
Common Name | GLYMA_14G070700, LOC100775682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 637aa MW: 70821.8 Da PI: 5.9746 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 399 | 436 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Glyma.14G070700.2.p 399 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 436 664459******************************88 PP | |||||||
2 | BELL | 126.6 | 9.1e-41 | 270 | 341 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+l kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi Glyma.14G070700.2.p 270 ERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISSQI 341 6899999****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.6E-62 | 189 | 339 | IPR006563 | POX domain |
Pfam | PF07526 | 1.8E-50 | 195 | 338 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.422 | 377 | 440 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-9 | 380 | 444 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.36E-12 | 380 | 441 | No hit | No description |
SuperFamily | SSF46689 | 3.81E-17 | 381 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-28 | 383 | 446 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.1E-17 | 397 | 436 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MYTSQAFSSG SYADMLSGNP LLPHNYSETV EGQNELKFIT SMRDTMTMQP IDGHSNAAAT 60 GDSESFVNAG DSHSHVIPRT TQLGVVESEQ NVLNQGLSLS LGSVMPSIAS VPTFPYQYPG 120 TSFSSLMTAC IPNSKDSSSH KDDETSLQRE LRNAECMASL ASRGFHKRED LYNPHASMCI 180 SEGRNDGLQG FSNNVLNSQY LKAAQELLDE IVNVRKALKQ TGLEKQQSFR DIGLDGSKDS 240 DGKSTSQSVQ ISSGPNGSAA NSSCELSPAE RQNLLDKKTK LLSMLDEVDK RYRQYCHQMQ 300 IVVSSFDMVA GCGAAEPYTA LALRTISRHF RCLRDAISSQ IQVTQRNLGE QEGIPRLRYV 360 DQQLRQQKAL QQLGVMRQAW RPQRGLPETS VSVLRAWLFE HFLHPYPKDS EKIMLARQTG 420 LTRNQVANWF INARVRLWKP MVEEMYKEEF GDSEMSSNLL SSENTLKAPR DDVQASDNKR 480 EESQDNLINV DDSVQHHGLK LDHASELDRG IQSSDHGENA MDPRIGKLQG DQRFNMNNSN 540 NNSPYYGDGC VMASTPATYD LPELGNIAVD GHVSLALELR NCESQGFGVS NDDMHKRHKK 600 TLASSPETDL LDYHFTDPGK QQNKFGNPHL LHEFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-16 | 386 | 444 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-16 | 386 | 444 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 3e-16 | 386 | 443 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-16 | 386 | 443 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26365 | 0.0 | meristem| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G070700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595918.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_006595919.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028200420.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028200421.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028200422.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9FXG8 | 1e-110 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A445H2J1 | 0.0 | A0A445H2J1_GLYSO; BEL1-like homeodomain protein 10 isoform A | ||||
TrEMBL | I1M880 | 0.0 | I1M880_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G07710.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-103 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G070700.2.p |
Entrez Gene | 100775682 |
Publications ? help Back to Top | |||
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