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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G063400.1.p | ||||||||
Common Name | GLYMA_14G063400, LOC100781228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 42861.1 Da PI: 6.0552 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v+q+G ++W+ Iar ++ gR++k+c++rw + Glyma.14G063400.1.p 38 KGPWSPEEDALLSRLVAQFGARNWSMIARGVP-GRSGKSCRLRWCNQ 83 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.6e-18 | 90 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Glyma.14G063400.1.p 90 RKPFTEEEDSIIVSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 134 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.581 | 33 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-31 | 35 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-16 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-17 | 38 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 39 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.47E-15 | 40 | 82 | No hit | No description |
PROSITE profile | PS51294 | 25.693 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-17 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 90 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.84E-13 | 92 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 92 | 138 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MTEEDRSAQE TVHNGVASTE LGGEEMDIAE VTAAGRVKGP WSPEEDALLS RLVAQFGARN 60 WSMIARGVPG RSGKSCRLRW CNQLDPCVKR KPFTEEEDSI IVSAHAIHGN KWAAIARLLP 120 GRTDNAIKNH WNSTLKRRCM EMGRYVPAHA DVMEDGTGSF DKTKASSEET MSIGDINSKN 180 PAEVRNVMMD NENKPPTKDD AKVEEHPTLH RPVARVSAFS VYNTPGRSTM GSCSKMFPRQ 240 SPLIQSPKPD VGSCKLFDDI DCEPMVPSQC GHGCCTGDSR ESHSHGSLLG PEFVDYLESP 300 SSSHAFISIA TDLNNIAWIK SGLENCSTGV TENTANLTAS RGVASALQTN FLGQDLKNGY 360 GQFEEGHGMF LGAMQEVLST KMARQHYAMP AEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-39 | 37 | 138 | 6 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G063400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034628 | 1e-33 | KM034628.1 Jatropha curcas clone JcMYB007 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545242.1 | 0.0 | transcription factor MYB25 | ||||
Swissprot | Q42575 | 1e-83 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | K7M582 | 0.0 | K7M582_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G06870.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-100 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G063400.1.p |
Entrez Gene | 100781228 |
Publications ? help Back to Top | |||
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