PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G062200.1.p
Common NameGLYMA_14G062200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 319aa    MW: 36311 Da    PI: 7.9879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G062200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.4e-073883346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT e+ +++  a + + ++   +W ++a++++ g+t  +++  ++ 
  Glyma.14G062200.1.p 38 EWTREDNKKFESALAIYDNDtpdRWFKVAAMIP-GKTVFDVIKQYRE 83
                         7********************************.****999999875 PP
2Myb_DNA-binding40.37.1e-13138182347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Glyma.14G062200.1.p 138 PWTEDEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 182
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0443489IPR017884SANT domain
SMARTSM007172.2E-83587IPR001005SANT/Myb domain
SuperFamilySSF466894.63E-113791IPR009057Homeodomain-like
CDDcd001675.94E-73884No hitNo description
PfamPF002494.9E-63883IPR001005SANT/Myb domain
PROSITE profilePS5129418.763131187IPR017930Myb domain
SuperFamilySSF466891.05E-15133187IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-10135181IPR009057Homeodomain-like
SMARTSM007172.3E-10135185IPR001005SANT/Myb domain
CDDcd001671.68E-8138182No hitNo description
PfamPF002492.1E-10138182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MIFPRFCTNL KDMELETIYP PCFMPNSNWF VQESHSTEWT REDNKKFESA LAIYDNDTPD  60
RWFKVAAMIP GKTVFDVIKQ YRELEEDVSE IEAGRVPIPG YLASSFTFEL VDNHNYDGCR  120
RRLAPVRGSD QERKKGVPWT EDEHRRFLMG LLKYGKGDWR NISRNFVVTK TPTQVASHAQ  180
KYYIRQKVSG GKDKRRPSIH DITTVNLTET SASDKNKPQL FNASPVLAPQ QKLNSISKVQ  240
LGWTSSHYND GSFMVFNPNS DALFVSSSPD VTSMALKMQG QDLYDCALHE AYAKVKVPGF  300
SMAPRDFNNE AVFGIHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15391011173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.273600.0cotyledon| epicotyl| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G062200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-159AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235748.10.0MYB transcription factor MYB75
RefseqXP_028201148.10.0transcription factor DIVARICATA-like
RefseqXP_028201149.10.0transcription factor DIVARICATA-like
RefseqXP_028201150.10.0transcription factor DIVARICATA-like
RefseqXP_028201151.10.0transcription factor DIVARICATA-like
RefseqXP_028201153.10.0transcription factor DIVARICATA-like
RefseqXP_028201154.10.0transcription factor DIVARICATA-like
RefseqXP_028201155.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H72e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0R0GGV40.0A0A0R0GGV4_SOYBN; Uncharacterized protein
STRINGGLYMA14G06750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]