PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 239aa MW: 26971.3 Da PI: 6.8725

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G058100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	1e-17	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G ++W+ I++ ++ gR++k+c++rw + Glyma.14G058100.1.p 12 KGSWSPQEDATLLKLVNEHGARNWSVISAGIP-GRSGKSCRLRWCNQ 57 799***************************.*********985 PP
2	Myb_DNA-binding	55.2	1.6e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ Glyma.14G058100.1.p 66 PFTPAEDKMIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.736	7	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.48E-30	9	105	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-15	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-18	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-24	13	65	IPR009057	Homeodomain-like
CDD	cd00167	2.65E-14	14	56	No hit	No description
PROSITE profile	PS51294	24.575	59	113	IPR017930	Myb domain
SMART	SM00717	4.5E-15	63	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-23	66	112	IPR009057	Homeodomain-like
CDD	cd00167	2.79E-12	66	109	No hit	No description
Pfam	PF00249	7.1E-15	66	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTTMTGGDNR VKGSWSPQED ATLLKLVNEH GARNWSVISA GIPGRSGKSC RLRWCNQLSP 60 EVQHRPFTPA EDKMIIKAHA IHGNKWATIS RLLPGRTDNA IKNHWNSTLR RRRTAEQSSS 120 SSASPPAKRP SSLFDTLHPL KKQCIEKENE EESPVTTSLS LFPPGEKSEE EEEEEEKEEF 180 ANQKVSDQNY FMQMMQRMIA EEVRNYMETL RNCSLEPGLD LLSPTLPNHL PSPCGFER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-36	11	112	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-36	11	112	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-36	11	112	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-36	11	112	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-36	11	112	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.13756	0.0	meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G058100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595859.1	1e-168	transcription factor MYB73 isoform X1
Refseq	XP_028199805.1	1e-168	transcription factor MYB73-like isoform X1
TrEMBL	A0A0R0G9N6	1e-176	A0A0R0G9N6_SOYBN; Uncharacterized protein
STRING	GLYMA14G06320.2	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11600	29	35
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-51	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Glyma.14G058100.1.p