PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G050000.4.p
Common NameGLYMA_14G050000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 319aa    MW: 34665.2 Da    PI: 8.4549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G050000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-062141527
                         -TTTTT-SS-SSS CS
              zf-CCCH 15 CkyGdrCkFaHgp 27
                         CkyG++Ck++H++
  Glyma.14G050000.4.p  2 CKYGSTCKYHHPK 14
                         ***********96 PP
2zf-CCCH38.61.8e-123759527
                         --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                          C++++rtG Ck+G  CkF+H++
  Glyma.14G050000.4.p 37 SCPYYMRTGSCKFGVACKFHHPQ 59
                         6********************97 PP
3zf-CCCH40.64.4e-13174199227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ tGtCkyG+ CkF+H++
  Glyma.14G050000.4.p 174 DQPECRYFMSTGTCKYGSDCKFHHPK 199
                          689*********************96 PP
4zf-CCCH32.51.5e-10216241126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++ C++++ +G Ck+G++CkF H+
  Glyma.14G050000.4.p 216 PGQAVCSYYRIYGMCKFGPTCKFDHP 241
                          57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.864115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-63159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0283260IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43459IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-103659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-53758IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624172200IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-11174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7175201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-7178199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5213241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544215243IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6215242IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001220240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCKYGSTCKY HHPKDRRGAA PVSFNTLGFP MRQEEKSCPY YMRTGSCKFG VACKFHHPQY  60
ASLGAYPLAG GPPTPTSTII PTSGLSYAGG FPAWSAVPRM SYLSGQGLQS YVPPFLPSSQ  120
GVIPVQSWNN YMGNMNPAML NGFLGSNLVY DYMNLGEPLF GGQAINSALP NRPDQPECRY  180
FMSTGTCKYG SDCKFHHPKE RISQSLINPL GLPVRPGQAV CSYYRIYGMC KFGPTCKFDH  240
PVLTIPQNYG LTSPAMNVLD TPLTRGLSNV QPPETSPSKL SSDNKLQHSD AKAATEDSSK  300
QDDTTSNSFP ASAEPLHD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617640.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G050000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545603.20.0zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_006595835.20.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A0R0GIP80.0A0A0R0GIP8_SOYBN; Uncharacterized protein
STRINGGLYMA14G05460.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-75C3H family protein