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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.14G034800.1.p |
| Common Name | GLYMA_14G034800 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
SRS |
| Protein Properties |
Length: 350aa MW: 36900.8 Da PI: 8.3423 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.14G034800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 219.6 | 6.8e-68 | 133 | 293 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92
sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq +++a+++ a +s +++ +k++r +++++++s+t++s
Glyma.14G034800.1.p 133 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTS 221
7889**********************************************99999999999999999999999986.88899999***** PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++++++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+
Glyma.14G034800.1.p 222 NTTPPRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 293
**********999********************************************************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MWSTQARSIN YPEMGMFVVA PASSFHHHHH HQPPQHDPSV MADSLNPATA LGVGVGVIPL 60
LAATPCLESD NNILGSRTRG GGGIQLWQDQ QQHHQSHYMK KQLQQGLLDH NSNTSSGNLI 120
QNSGEVTASG TSSGGTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR 180
ERQLMTSATA AVAGSSGSTS GTKKPRLIAS QTTTTSHTST SNTTPPRSFD TSSSHQDAGF 240
KESLPGQVRA PAVFKCVRVT AVEDGQDEYA YQAVVKIGGH VFKGFLYDQG VENRDVYPNL 300
SELHLGGGSG GAGRNGVSSS SPMMDPNDVY AASGGGLLGG SSAYGNPMN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 8e-71 | Lateral root primordium (LRP) protein-related |
