PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G034300.1.p
Common NameGLYMA_14G034300, LOC100803515
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 528aa    MW: 59268.8 Da    PI: 6.8644
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G034300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-182075257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         +kR   t+ ql++Le+++++++yp++e++  LA++lgLte+q++ WF+ rR k+k+
  Glyma.14G034300.1.p 20 KKRKLKTPAQLKALENFYNEHKYPTEEMKLVLAEELGLTEKQISGWFCHRRLKDKR 75
                         89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-21275IPR009057Homeodomain-like
PROSITE profilePS5007116.9571676IPR001356Homeobox domain
SuperFamilySSF466893.08E-181680IPR009057Homeodomain-like
SMARTSM003891.2E-191880IPR001356Homeobox domain
CDDcd000862.13E-172075No hitNo description
PfamPF000465.1E-162075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEESSELQSE ENKVSNEKNK KRKLKTPAQL KALENFYNEH KYPTEEMKLV LAEELGLTEK  60
QISGWFCHRR LKDKRLMKDE AVANGRQDRS SGVIQDRGSG LGQDSCGSSK HADHRYLDPK  120
EVESHGLYNH ELSVADMTHG CRNRYPENVS GVDDTSSESS SFLQERLFSQ GLDPYDMEPS  180
RHLTPNGALP PLNPKGAVNM GHKPSGYLKV KGEIEHAAIT AVKKQLGRHY LEDGPLLGIE  240
FDLLPPGAFE CQTADPANEP YSATNPLLLN SPEISAAKRQ PSISSRYDSY YTKFSSQDPH  300
MEGADFGSLH ETDFQDKQDK KARQNIKQRQ PLYGYTNHFP GRNSFPDLYE DSTGEASAYN  360
STKSHRMSTK HGVEGMRSDS ASNHSDHYEE KLAVKQKGLM LHGYDNINLK NMQRSEHVKS  420
KPSSSIRNSR VPMDTEERGL SARMAKEEMF KGDRKAKNTY CNVDGAGMLS NEIMVAKRAK  480
VDMLQQYNVK KSPVAEMEQR KIQRSAADLP SSFSEDETAD TNSSLDY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184750.0cotyledon| flower| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G034300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545402.10.0uncharacterized protein LOC100803515
RefseqXP_028201159.10.0uncharacterized protein LOC114385327
TrEMBLA0A445H1000.0A0A445H100_GLYSO; Homeobox-DDT domain protein RLT1
TrEMBLI1M7400.0I1M740_SOYBN; Uncharacterized protein
STRINGGLYMA14G03850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.15e-80HB-other family protein