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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G032700.1.p | ||||||||
Common Name | GLYMA_14G032700, LOC100810798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 897aa MW: 98724.1 Da PI: 6.7947 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.1 | 8.2e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.14G032700.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 216 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.14G032700.1.p 217 --WNEKNQLLLGIRRA 230 ..8899999****997 PP | |||||||
2 | Auxin_resp | 113.5 | 2e-37 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fet+ ss r++Gt++g+sdldpvrWpnS+Wrs+k Glyma.14G032700.1.p 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETKKSSVPRYMGTITGISDLDPVRWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.16E-49 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-42 | 123 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-21 | 128 | 229 | No hit | No description |
SMART | SM01019 | 1.8E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-32 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-8 | 749 | 844 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-7 | 753 | 836 | No hit | No description |
PROSITE profile | PS51745 | 23.264 | 760 | 846 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 897 aa Download sequence Send to blast |
MKLSSSGFNP PAEEEGEKKC LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR 60 EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLLPAELGT 120 PGKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRISVGMRF 300 RMLFETKKSS VPRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL 420 GVTPWMQPRL DASIPGLQPE LYQAMASSAF QEIRTMDPSK SSQSLLQFQQ TSNVPSAHAS 480 EVQRQVLPQS QPQNTLLHNY QENQVPAQSQ LLQQQLHRYH PYSDPRQQQQ QLKNLPVQQQ 540 LPNVISPLSN FASGTQSQSP PIQALASHCQ QQSFPELMRN HISGSDVSSI HSLLGSFSQD 600 GTSQLLNLSG SNSVMSSAAM LPKQITTEPP QLPSAAPQCV LPQVENLGTS QSNVSELAAL 660 PPFAGREHSA YHAAADPQSN LLFGINIDPS SLMLQNGMSN LRNIGNVNNS LSLPFSASNC 720 GGASGTDFPL SSNMTTSSCV DESGFLQSSE NVDQANTPTG TFVKVHKSGS FGRSLDISKF 780 SSYDELISEL ARMFGLEGQL EDPKTQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVWYIK 840 ILSPLEVQQM GKGLSPSTSA PGNKLSTPAN SCDNYVSQQE LRSSRNGMAS MGSFHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 13 | 359 | 42 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.54340 | 0.0 | cotyledon| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G032700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595764.2 | 0.0 | auxin response factor 6 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0R0G8P7 | 0.0 | A0A0R0G8P7_SOYBN; Auxin response factor | ||||
STRING | GLYMA14G03650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G032700.1.p |
Entrez Gene | 100810798 |
Publications ? help Back to Top | |||
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