PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 104aa MW: 11650.2 Da PI: 9.5667

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G027200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.5	6.3e-32	25	75	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey++ Glyma.14G027200.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 75 79***********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-40	17	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.207	17	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-34	18	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.13E-46	18	92	No hit	No description
PRINTS	PR00404	1.1E-33	19	39	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	19	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-27	26	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-33	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-33	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MEFPNEAIPE GCSQKKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVVFSSRGRL YEYANNSVRG TIDRYKKACA ASTNPESVSE ANTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	1e-21	18	85	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	1e-21	18	85	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	1e-21	18	85	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	1e-21	18	85	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
3mu6_A	1e-21	18	85	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	1e-21	18	85	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	1e-21	18	85	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	1e-21	18	85	1	68	Myocyte-specific enhancer factor 2A
6c9l_A	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-21	18	85	2	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.37598	1e-177	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269\|PubMed:27776173}.

Function -- GeneRIF ? help Back to Top
GmAGL1 may promote flowering mainly through the photoperiod pathway. [PMID: 29338682]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G027200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031274	1e-174	KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304521.1	6e-71	agamous-like MADS-box protein AGL1
Refseq	XP_028199250.1	6e-71	agamous-like MADS-box protein AGL5 isoform X1
Refseq	XP_028199251.1	4e-71	agamous-like MADS-box protein AGL5 isoform X2
Refseq	XP_028199252.1	4e-71	agamous-like MADS-box protein AGL5 isoform X2
Refseq	XP_028199253.1	4e-71	agamous-like MADS-box protein AGL5 isoform X3
Swissprot	P29381	1e-53	AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBL	A0A0R0G8B9	2e-70	A0A0R0G8B9_SOYBN; Uncharacterized protein (Fragment)
TrEMBL	A0A1P8P0F0	1e-69	A0A1P8P0F0_SOYBN; Agamous-like 1 protein
TrEMBL	A0A445H0L8	1e-69	A0A445H0L8_GLYSO; Agamous-like MADS-box protein AGL5 isoform A
TrEMBL	A0A445H0R0	1e-69	A0A445H0R0_GLYSO; Agamous-like MADS-box protein AGL5 isoform B
TrEMBL	I1M6W3	1e-69	I1M6W3_SOYBN; MADS transcription factor
STRING	GLYMA14G03100.1	2e-70	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	4e-56	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Glyma.14G027200.1.p
Entrez Gene	100792224

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547] Matalon O, et al. Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity. Sci Signal, 2016. 9(429): p. ra54 [PMID:27221712] Ehlers K, et al. The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana. PLoS ONE, 2016. 11(10): p. e0165075 [PMID:27776173] Zeng X, et al. Soybean MADS-box gene GmAGL1 promotes flowering via the photoperiod pathway. BMC Genomics, 2018. 19(1): p. 51 [PMID:29338682]