PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G000400.1.p

Common Name

GLYMA_14G000400, LOC100793442

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 778aa MW: 89353 Da PI: 6.2447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G000400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.4e-31	70	161	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel Glyma.14G000400.1.p 70 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHEL 159 9*************************************998888545677889********************************* PP FAR1 90 ap 91 +p Glyma.14G000400.1.p 160 VP 161 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-30	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-32	282	374	IPR018289	MULE transposase domain
Pfam	PF04434	2.5E-12	550	596	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.029	562	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEGDL LDLEPCEGME 60 FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE 120 IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT 180 LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR 240 QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAPF 300 TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRP PVSITTDHDS VIRSAIIQVF 360 PETRHRFCKW HIFKKCQEKL SHIFLQYPNF EAEFHKCVNL TESTEEFESC WSTLVDKYDL 420 RDHEWLQAIY SSCRQWVPVY LRDTFFAEMS ITQRSDSMNS YFDGYINAST NLSQFFKLYE 480 KALESRNEKE VRADYDTMNT LPVLRTPSPM EKQASELYTR KIFMRFQEEL VGTLTLMASK 540 ADDDGEVITY HVAKYGEDHK GYCVKFNVLE MKATCSCQMF EFSGLLCRHV LAVFRVTNVL 600 TLPSHYILKR WTRNAKSNVI LEEHACDVYT YYLESHIVRY NTLRHEAFKF VDEGARSAET 660 YDVAMDALQE AAKRVSQGMQ NEGKIPINNG KVRSHVLNDE SHANYTSGCQ EESLSQHMSK 720 DDLDKNIRKL MNELECANRK CEIYRSNLLS VLKAVEDHKL ELSVKVENIK ISMKDGI*

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEGDL LDLEPCEGME  60
FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE  120
IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT  180
LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR  240
QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAPF  300
TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRP PVSITTDHDS VIRSAIIQVF  360
PETRHRFCKW HIFKKCQEKL SHIFLQYPNF EAEFHKCVNL TESTEEFESC WSTLVDKYDL  420
RDHEWLQAIY SSCRQWVPVY LRDTFFAEMS ITQRSDSMNS YFDGYINAST NLSQFFKLYE  480
KALESRNEKE VRADYDTMNT LPVLRTPSPM EKQASELYTR KIFMRFQEEL VGTLTLMASK  540
ADDDGEVITY HVAKYGEDHK GYCVKFNVLE MKATCSCQMF EFSGLLCRHV LAVFRVTNVL  600
TLPSHYILKR WTRNAKSNVI LEEHACDVYT YYLESHIVRY NTLRHEAFKF VDEGARSAET  660
YDVAMDALQE AAKRVSQGMQ NEGKIPINNG KVRSHVLNDE SHANYTSGCQ EESLSQHMSK  720
DDLDKNIRKL MNELECANRK CEIYRSNLLS VLKAVEDHKL ELSVKVENIK ISMKDGI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61376	0.0	hypocotyl

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G000400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545054.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_028199862.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	K7M440	0.0	K7M440_SOYBN; Uncharacterized protein
STRING	GLYMA14G00240.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.14G000400.1.p
Entrez Gene	100793442

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]