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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G368500.1.p | ||||||||
Common Name | GLYMA_13G368500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 33061.1 Da PI: 4.541 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.5 | 2.1e-12 | 114 | 159 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++ s+f L +P + kK++Ka +L++A++Y+k+Lq Glyma.13G368500.1.p 114 HIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 159 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.615 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-10 | 114 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 114 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-10 | 114 | 163 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-16 | 114 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-13 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEENPWGSWS SNMEMDDEDV NESLRETNQF DEEFLRDILQ QPEEGGEDLK NSSIMSSLFP 60 TTYILSFDKS AAELLPTETD HRDYSSSQLP SSSNSRANHG TNKKPRSASE SLDHIMSERN 120 RRQELTSKFI ALAATIPGLK KMDKAHVLRE AINYVKQLQE RIEELEEDIR KNGVESAITI 180 IRSHLCIDDD SNTDEECYGP NEALPEVEAR VLGKEVLIKI YCGKQKGILL KIMSQLERLH 240 LYISTSNVLP FGNTLDITIT AQMGDKYNLV VNDLVKELRQ VAMMKSCDVQ Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36239 | 0.0 | leaf| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G368500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093707 | 0.0 | BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028188787.1 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | I1M5X6 | 0.0 | I1M5X6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44570.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15398 | 7 | 11 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 9e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G368500.1.p |