PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G363600.1.p | ||||||||
Common Name | GLYMA_13G363600, LOC102663279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 171aa MW: 19153.7 Da PI: 9.5732 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4e-08 | 21 | 44 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kte Cr+f+r G C +G++C +aH+ Glyma.13G363600.1.p 21 KTEMCRRFRR-GVCVHGSKCIYAHS 44 8*********.*************8 PP | |||||||
2 | zf-CCCH | 23.2 | 1.2e-07 | 56 | 77 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Crff+++ C+yG +C+F H+ Glyma.13G363600.1.p 56 QCRFFLQNKRCHYGRTCRFLHS 77 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.28E-8 | 18 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 19 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-12 | 19 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 19 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.41 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.526 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-6 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 56 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEAQSHGFNA ESSDSNKLMV KTEMCRRFRR GVCVHGSKCI YAHSVAELRL QRQPKQCRFF 60 LQNKRCHYGR TCRFLHSSTP LNPNPQPEVG KLDPYSSPES KRMRTCAAAP SDDGCSSAEQ 120 RIMQTSAAAD AATNASTSTV ATKNEPSYPV KFIFKNNDLQ RISRIYADWI * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G363600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595161.1 | 1e-127 | probable E3 ubiquitin-protein ligase makorin-2 | ||||
Refseq | XP_025980732.1 | 1e-127 | probable E3 ubiquitin-protein ligase makorin-2 | ||||
TrEMBL | K7M3X6 | 1e-125 | K7M3X6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44045.1 | 1e-126 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15954 | 7 | 7 | Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 4e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G363600.1.p |
Entrez Gene | 102663279 |