PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G352000.1.p

Common Name

GLYMA_13G352000, LOC778096

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 213aa MW: 22588.9 Da PI: 8.486

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G352000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.8	1.5e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s Glyma.13G352000.1.p 16 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRS 76 57899****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	11	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.562	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MQDPTLFQPM KPHFPEQEQL KCPRCDSTNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL 60 RNIPVGGGSR KNTKRSSSSN NNTKHASPSP PVSSAPAPEI DPTRTDPNPV GGGGSFRSLL 120 ASSGHLGLGN LLEGLNSSGS NLKSVQMEEF GENVSSGTPV AVPGSGQNPG LEMQSNGNAE 180 SFLSLQNGDS GCCNGTNGWS NLAIFTPGSS YQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.19765	0.0	seed coat

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G352000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857252	0.0	DQ857252.1 Glycine max Dof1 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543607.1	1e-154	dof zinc finger protein DOF3.1
Refseq	XP_028186386.1	1e-154	dof zinc finger protein DOF3.1-like
Swissprot	O82155	2e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A445IEQ3	1e-153	A0A445IEQ3_GLYSO; Dof zinc finger protein DOF1.7
TrEMBL	I1M5E0	1e-153	I1M5E0_SOYBN; Uncharacterized protein
STRING	GLYMA13G42820.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-35	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Glyma.13G352000.1.p
Entrez Gene	778096

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]