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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G352000.1.p | ||||||||
Common Name | GLYMA_13G352000, LOC778096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 213aa MW: 22588.9 Da PI: 8.486 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.8 | 1.5e-40 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s Glyma.13G352000.1.p 16 EQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRS 76 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 11 | 65 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.562 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MQDPTLFQPM KPHFPEQEQL KCPRCDSTNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL 60 RNIPVGGGSR KNTKRSSSSN NNTKHASPSP PVSSAPAPEI DPTRTDPNPV GGGGSFRSLL 120 ASSGHLGLGN LLEGLNSSGS NLKSVQMEEF GENVSSGTPV AVPGSGQNPG LEMQSNGNAE 180 SFLSLQNGDS GCCNGTNGWS NLAIFTPGSS YQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19765 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G352000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857252 | 0.0 | DQ857252.1 Glycine max Dof1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543607.1 | 1e-154 | dof zinc finger protein DOF3.1 | ||||
Refseq | XP_028186386.1 | 1e-154 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 2e-43 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A445IEQ3 | 1e-153 | A0A445IEQ3_GLYSO; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | I1M5E0 | 1e-153 | I1M5E0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G42820.1 | 1e-154 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6181 | 33 | 51 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-35 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G352000.1.p |
Entrez Gene | 778096 |
Publications ? help Back to Top | |||
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