PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G341600.2.p | ||||||||
Common Name | GLYMA_13G341600, LOC100805273 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 79456 Da PI: 6.7879 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.4 | 4.3e-27 | 29 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p Glyma.13G341600.2.p 29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114 9***************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.1E-25 | 29 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-28 | 227 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.373 | 506 | 542 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-7 | 512 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-7 | 517 | 544 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MDSSAVVGST ISEPHSDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF 120 RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA YQNVDCLENF VKHQHDKGRS LVLEAGHAHL 180 LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK 240 IPLVMFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERAPQVL LTDQNEAIKA 300 AVAAFLPGTR HCFCLWHILE MIPKQLEFFG AWHDSFLEKF NNCIYKSWTE EQFDKKWWEL 360 VDDFNLRDVD WVQSLYDDRT CWAPTFMKDI SFAGLSTSSR SESLNSLFDN YIQIDTSLRA 420 FIEQYRMILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LSVYTHEIFR KFQVEVLGAA 480 ACHLKKENDG VTSAYTVKDF ENNQNYMVEW NTSTSDICCS CHLFEYKGYL CRHAIVVLQM 540 SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY 600 YMALGAISEA LKQCANLNNS VENGMRPDAS STHVVCNVEE EYHSIITSKN KVPDPKPNTG 660 KKAVRSGMAG RSLGSVENSE GNKGKFALFV L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21398 | 0.0 | cotyledon| root| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G341600.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595047.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X2 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A0R0GZ19 | 0.0 | A0A0R0GZ19_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G41660.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G341600.2.p |
Entrez Gene | 100805273 |
Publications ? help Back to Top | |||
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