PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 744aa MW: 85228.3 Da PI: 6.7906

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G341600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.8e-27	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p Glyma.13G341600.1.p 29 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114 9*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-28	227	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-7	512	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MDSSAVVGST ISEPHSDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF 120 RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA YQNVDCLENF VKHQHDKGRS LVLEAGHAHL 180 LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK 240 IPLVMFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERAPQVL LTDQNEAIKA 300 AVAAFLPGTR HCFCLWHILE MIPKQLEFFG AWHDSFLEKF NNCIYKSWTE EQFDKKWWEL 360 VDDFNLRDVD WVQSLYDDRT CWAPTFMKDI SFAGLSTSSR SESLNSLFDN YIQIDTSLRA 420 FIEQYRMILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LSVYTHEIFR KFQVEVLGAA 480 ACHLKKENDG VTSAYTVKDF ENNQNYMVEW NTSTSDICCS CHLFEYKGYL CRHAIVVLQM 540 SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY 600 YMALGAISEA LKQCANLNNS VENGMRPDAS STHVVCNVEE EYHSIITSKN KVPDPKPNTG 660 KKAVRSGMAG RSLGSVENSE GNKGKVSQVE VGSGKDGFQQ MELTDPRSHN VMPMQFHSVV 720 PALFHNVSSP FHTAPSTHLH ENR*

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MDSSAVVGST ISEPHSDMEF ESHEAAYAFY KEYAKSAGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRSSDPLS NDVRMRRRKN SNAVSKLFTA YQNVDCLENF VKHQHDKGRS LVLEAGHAHL  180
LLELFMHMQE ENPKFFYAVD LNEEHRLRNV FWVDAKGLED FTYFSDVVSF DTTYFTSKYK  240
IPLVMFIGVN HHIQPTLLGC ALIADETIYT FAWLLQTWLI AMGERAPQVL LTDQNEAIKA  300
AVAAFLPGTR HCFCLWHILE MIPKQLEFFG AWHDSFLEKF NNCIYKSWTE EQFDKKWWEL  360
VDDFNLRDVD WVQSLYDDRT CWAPTFMKDI SFAGLSTSSR SESLNSLFDN YIQIDTSLRA  420
FIEQYRMILE DRHEEEAKAN FDAWHETPDL KSPSPFEKQM LSVYTHEIFR KFQVEVLGAA  480
ACHLKKENDG VTSAYTVKDF ENNQNYMVEW NTSTSDICCS CHLFEYKGYL CRHAIVVLQM  540
SGVFSIPPKY ILQRWTNAAM SRHPIGEKLE EVQSKVRRFN DLCRRAIILG EEGSLSQESY  600
YMALGAISEA LKQCANLNNS VENGMRPDAS STHVVCNVEE EYHSIITSKN KVPDPKPNTG  660
KKAVRSGMAG RSLGSVENSE GNKGKVSQVE VGSGKDGFQQ MELTDPRSHN VMPMQFHSVV  720
PALFHNVSSP FHTAPSTHLH ENR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21398	0.0	cotyledon\| root\| seed coat

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G341600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595046.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	I1M527	0.0	I1M527_SOYBN; Uncharacterized protein
STRING	GLYMA13G41660.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Glyma.13G341600.1.p
Entrez Gene	100805273

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]