PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G333200.4.p
Common NameGLYMA_13G333200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 202aa    MW: 22452.6 Da    PI: 4.4796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G333200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Glyma.13G333200.4.p  2 TPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTLM 43
                         9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.7E-12145IPR001005SANT/Myb domain
PROSITE profilePS5129424.915147IPR017930Myb domain
CDDcd001679.20E-13143No hitNo description
Gene3DG3DSA:1.10.10.602.0E-19244IPR009057Homeodomain-like
PfamPF002491.7E-14242IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-12248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTPQEERLVL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR TLMRKKAQEK KRGEAASSSP  60
TPSSVDSSIS SNNHAVDPHA SKKAGEESFY DTGGDNGVIA ATQDQGQKGD QQGLFSMDDI  120
WKDIDNMSEE NNTTLQPVSV YDGHSEEGCN FSCPPQVPSP SSWEYSSSDP LWVMDEESLF  180
CPLSEEPYFS CYAQGTVFLT G*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G333200.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966870.0BT096687.1 Soybean clone JCVI-FLGm-21E3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980613.11e-150MYB transcription factor MYB139 isoform X3
RefseqXP_028191404.11e-150transcription factor MYB48-like isoform X2
SwissprotQ9LX822e-40MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A445IDT01e-149A0A445IDT0_GLYSO; Transcription factor MYB48 isoform A
TrEMBLI1M4T11e-149I1M4T1_SOYBN; Uncharacterized protein
STRINGGLYMA13G40830.41e-148(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.24e-38myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]