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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G329700.3.p | ||||||||
Common Name | GLYMA_13G329700, LOC100777102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 462aa MW: 50957.8 Da PI: 8.2142 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.2e-17 | 136 | 185 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Glyma.13G329700.3.p 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-9 | 136 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-16 | 136 | 193 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.82 | 137 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-11 | 137 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-17 | 137 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-31 | 137 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-6 | 228 | 272 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.25E-13 | 228 | 273 | No hit | No description |
SMART | SM00380 | 2.4E-13 | 229 | 277 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MLDLNLTAES TQNDELLVLL DKFPEASSGT SNSSIVNAEG SSNEDSCSTR AGDVFTFNFG 60 ILKVEAANDV VAAATKELFP VSSENWQGQS STSLFQARKS LMDLSLDQQH GEVKVVQVQP 120 QPKVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA 180 IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS SGFSRGSSKY RGVTLHKCGR 240 WEARMGQFLG KKAYDKAAIK CNGREAVTNF EPSTYESEMK PEAINEGGSH DLDLSLGIAT 300 PGHGPKENRG HLQFQSIPYN MHPGRSSMME TNINSVIGDP SLKRLVVTEE RPSVWNAAYS 360 TFFPNLERAE RMGTDPSKGV PNPNWAWQTH GQVTDTPVPP FSTAASSGFS ISATFPSTAI 420 FPTKSINSVP HSLCFTSPST PGSNAPQFYN YYEVKSPQPP S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35024 | 0.0 | cotyledon| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G329700.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143410 | 0.0 | BT143410.1 Lotus japonicus clone JCVI-FLLj-21N13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595001.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 1e-107 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | K7M396 | 0.0 | K7M396_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G40470.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 5e-92 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G329700.3.p |
Entrez Gene | 100777102 |