PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G329700.2.p
Common NameGLYMA_13G329700, LOC100777102
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 462aa    MW: 50957.8 Da    PI: 8.2142
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G329700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.2e-17136185155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.13G329700.2.p 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                          78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-16136193IPR016177DNA-binding domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
CDDcd000182.12E-11137192No hitNo description
Gene3DG3DSA:3.30.730.104.8E-17137193IPR001471AP2/ERF domain
SMARTSM003801.8E-31137199IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-6228272IPR016177DNA-binding domain
CDDcd000182.25E-13228273No hitNo description
SMARTSM003802.4E-13229277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLDLNLTAES TQNDELLVLL DKFPEASSGT SNSSIVNAEG SSNEDSCSTR AGDVFTFNFG  60
ILKVEAANDV VAAATKELFP VSSENWQGQS STSLFQARKS LMDLSLDQQH GEVKVVQVQP  120
QPKVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS SGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKAYDKAAIK CNGREAVTNF EPSTYESEMK PEAINEGGSH DLDLSLGIAT  300
PGHGPKENRG HLQFQSIPYN MHPGRSSMME TNINSVIGDP SLKRLVVTEE RPSVWNAAYS  360
TFFPNLERAE RMGTDPSKGV PNPNWAWQTH GQVTDTPVPP FSTAASSGFS ISATFPSTAI  420
FPTKSINSVP HSLCFTSPST PGSNAPQFYN YYEVKSPQPP S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350240.0cotyledon| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G329700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434100.0BT143410.1 Lotus japonicus clone JCVI-FLLj-21N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595001.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-107RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLK7M3960.0K7M396_SOYBN; Uncharacterized protein
STRINGGLYMA13G40470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.15e-92related to AP2.7