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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G328000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 621aa MW: 68962.7 Da PI: 6.4587 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 161 | 240 | 1 | 75 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L Glyma.13G328000.1.p 161 FCKTLTASDTSTHGGFSVPRRAAEDCfprldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLV 240 99****************************963.3445679**************************************96 PP | |||||||
2 | Auxin_resp | 119.7 | 2.3e-39 | 282 | 364 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L Glyma.13G328000.1.p 282 VANAISAKSMFHVFYSPRASHADFVVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYKWPKSKWRCL 364 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-37 | 153 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-32 | 154 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.04E-19 | 159 | 256 | No hit | No description |
Pfam | PF02362 | 1.1E-16 | 161 | 240 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-15 | 161 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 282 | 364 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.2E-7 | 482 | 574 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.035 | 491 | 573 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.38E-10 | 494 | 570 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MEIDLNDDAV TSEAEKSASC NEECEKGAAF ALSSSTCSSS GSSSARVSSS YLELWHACAG 60 PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMEMPTYDLQ PQIFSRVVNI QLLANKENDE 120 VYTQVTLLPR AEYLEGKELE ELGTDEEGNE ATPTKSTPHM FCKTLTASDT STHGGFSVPR 180 RAAEDCFPRL DYKQQRPSQE LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV 240 SEMQGENGEL RLGIRRAARP RNGLPESIVG SQSYYPNFLS SVANAISAKS MFHVFYSPRA 300 SHADFVVPYQ KYIKSIKNPV TIGTRFKMKF EMDESPERRC TSGIVTGMSD LDPYKWPKSK 360 WRCLMATKPS FHSLGPEVIQ TAYFPYGDIH NAGQGSSILC SKPTNFQREN IPFNTPSTQS 420 GIMRNEVGRS DITIPNEQKL QDNISGTASL GANMRIPKDD NFKGQVKACK LFGISLSGET 480 TAQNLQNSAK RSCTKVHKQG SLVGRAIDLS RLSSYNDLLI ELERLFSMEG LLIDPNKGWR 540 ILYTDSENDI MVVGDDPWHE FCDVVSKIHI HTQDEVEKMT IGMMINDDTQ SCLEQAPVTM 600 EASKSSSVGQ PDSSPTVVRM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldw_A | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldw_B | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldx_A | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldx_B | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldy_A | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
4ldy_B | 1e-102 | 53 | 364 | 22 | 331 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24737 | 0.0 | cotyledon| epicotyl| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G328000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ617271 | 0.0 | FJ617271.1 Lotus japonicus auxin response factor 4 (ARF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621785.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 4-like | ||||
Refseq | XP_028190393.1 | 0.0 | auxin response factor 4-like isoform X1 | ||||
Refseq | XP_028190394.1 | 0.0 | auxin response factor 4-like isoform X2 | ||||
Swissprot | Q9ZTX9 | 1e-171 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A368UHB3 | 0.0 | A0A368UHB3_SOYBN; Auxin response factor | ||||
STRING | GLYMA13G40310.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 | Representative plant | OGRP10049 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 1e-160 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G328000.1.p |