PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 316aa MW: 33985.3 Da PI: 8.364

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G321900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Glyma.13G321900.1.p 127 YECKTCNRTFPSFQALGGHRASH 149 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	224	246	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Glyma.13G321900.1.p 224 HECSICGSEFTSGQALGGHMRRH 246 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.11E-8	126	149	No hit	No description
Pfam	PF13912	2.9E-13	126	151	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.305	127	154	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	127	149	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	129	149	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.11E-8	219	246	No hit	No description
PROSITE profile	PS50157	10.076	224	251	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.3E-11	224	248	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	224	246	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	226	246	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLSQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV PTTTTITTVT AATTPIMTSS 60 CSSASCGGGS SSSTTFEEEE EDMANCLILL AQGKVGGDPP HRHKDLYGSD VKTEKLGSTK 120 VDHFYVYECK TCNRTFPSFQ ALGGHRASHK KPKVEEKKSS SPPLSLPPPP PPPPPSSSSL 180 FNFEEAKQSH HMKNIISPSV SLQLGCGNNN KVGLNFHGNK SKIHECSICG SEFTSGQALG 240 GHMRRHRAST NNNNIVQTTT TTSNGAVDVK PRNVLELDLN LPAPEDDLRD SKFQFPATQN 300 SMMRSAAPAL VGCHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.13409	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G321900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031151	0.0	KT031151.1 Glycine max clone HN_CCL_218 C2H2-Zn transcription factor (Glyma13g39620.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304592.2	0.0	C2H2-Zn transcription factor
Refseq	XP_028188100.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A445ID09	0.0	A0A445ID09_GLYSO; Zinc finger protein ZAT5
TrEMBL	I1M4G2	0.0	I1M4G2_SOYBN; C2H2-Zn transcription factor
STRING	GLYMA13G39620.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141
Representative plant	OGRP2350	10	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-52	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G321900.1.p

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]