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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.13G321800.5.p |
| Common Name | GLYMA_13G321800 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
C2H2 |
| Protein Properties |
Length: 252aa MW: 28036.2 Da PI: 9.0638 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G321800.5.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.6 | 0.00088 | 173 | 196 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23
y+C+ C+ k Fs s+L++H + +
Glyma.13G321800.5.p 173 YVCKRCNqKQFSVLSDLRTHEKHC 196
9*******************9876 PP
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| 2 | zf-C2H2 | 11.4 | 0.00098 | 204 | 219 | 5 | 20 |
TTTEEESSHHHHHHHH CS
zf-C2H2 5 dCgksFsrksnLkrHi 20
Cg+sFsrk+ L+ H
Glyma.13G321800.5.p 204 TCGTSFSRKDKLMGHV 219
6************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MISRATSSFP SVHHQGLQMF PDPEGFVSPS EESGSSGVIL SPNQSLPEPT SMAISSMNSI 60
IQEIIVTATS MMFTCQQMAL TTPPGFERDA NLRMHMRAHG DEYKTNAALS NPIKNKGNLL 120
EGGRECLMST VKPKYSCPQE GCRWNQRHVK FQPLKSMICA KNHYKRSHCP KMYVCKRCNQ 180
KQFSVLSDLR THEKHCGDLK WQCTCGTSFS RKDKLMGHVA LFVGHQPAAA INNSNALSFS 240
AKLEQQHTLQ M*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-125 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
