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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.13G321800.3.p |
| Common Name | GLYMA_13G321800 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
C2H2 |
| Protein Properties |
Length: 201aa MW: 22682.3 Da PI: 9.752 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G321800.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12 | 0.00064 | 122 | 145 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23
y+C+ C+ k Fs s+L++H + +
Glyma.13G321800.3.p 122 YVCKRCNqKQFSVLSDLRTHEKHC 145
9*******************9876 PP
|
| 2 | zf-C2H2 | 11.8 | 0.00073 | 153 | 168 | 5 | 20 |
TTTEEESSHHHHHHHH CS
zf-C2H2 5 dCgksFsrksnLkrHi 20
Cg+sFsrk+ L+ H
Glyma.13G321800.3.p 153 TCGTSFSRKDKLMGHV 168
6************997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MAISSMNSII QEIIVTATSM MFTCQQMALT TPPGFERDAN LRMHMRAHGD EYKTNAALSN 60
PIKNKGNLLE GGRECLMSTV KPKYSCPQEG CRWNQRHVKF QPLKSMICAK NHYKRSHCPK 120
MYVCKRCNQK QFSVLSDLRT HEKHCGDLKW QCTCGTSFSR KDKLMGHVAL FVGHQPAAAI 180
NNSNALSFSA KLEQQHTLQM *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-125 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
